Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C7Y71_RS08720 Genome accession   NZ_CP033459
Coordinates   2159485..2160861 (+) Length   458 a.a.
NCBI ID   WP_111898220.1    Uniprot ID   A0A5P8E828
Organism   Pseudoprevotella muciniphila strain E39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2154485..2165861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7Y71_RS08690 (C7Y71_008770) - 2155063..2155908 (-) 846 WP_193215889.1 dienelactone hydrolase family protein -
  C7Y71_RS08695 (C7Y71_008775) - 2155905..2156996 (-) 1092 WP_111898223.1 mannose-1-phosphate guanylyltransferase -
  C7Y71_RS08705 (C7Y71_008785) greA 2157466..2157930 (-) 465 WP_111898222.1 transcription elongation factor GreA -
  C7Y71_RS08710 (C7Y71_008790) - 2158143..2158679 (-) 537 WP_146739396.1 hypothetical protein -
  C7Y71_RS08715 (C7Y71_008795) - 2158906..2159250 (+) 345 WP_111898241.1 MerR family transcriptional regulator -
  C7Y71_RS08720 (C7Y71_008800) radA 2159485..2160861 (+) 1377 WP_111898220.1 DNA repair protein RadA Machinery gene
  C7Y71_RS08725 (C7Y71_008805) - 2160876..2162531 (+) 1656 WP_111898219.1 NAD(P)/FAD-dependent oxidoreductase -
  C7Y71_RS08730 (C7Y71_008810) - 2162667..2162975 (+) 309 WP_111898218.1 helix-turn-helix domain-containing protein -
  C7Y71_RS08735 (C7Y71_008815) - 2162972..2164462 (+) 1491 WP_111898217.1 type II toxin-antitoxin system HipA family toxin -
  C7Y71_RS08740 (C7Y71_008820) - 2164750..2165463 (-) 714 WP_111898216.1 lipopolysaccharide kinase InaA family protein -
  C7Y71_RS08745 (C7Y71_008825) - 2165645..2165809 (-) 165 WP_262883948.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49782.25 Da        Isoelectric Point: 6.8230

>NTDB_id=323836 C7Y71_RS08720 WP_111898220.1 2159485..2160861(+) (radA) [Pseudoprevotella muciniphila strain E39]
MAQKSKTVFVCSNCGYDAPKWQGKCPSCGQWNTFKEMTIMPERRSEKIASGVLDNGHKSEPVRLSSISAAEEPRIDTHDT
ELNRVLGGGLVPGSLTLLGGEPGIGKSTLLLQTILGMRDKNVLYVSGEESERQIKLRADRLNHQGTDCLLLCETELERIF
AHIKNTQPDMVVIDSIQTIFTSTIDSAPGNITQIRECTAAILKYAKESSVPVILIGHITKDGTIAGPKVLEHIVDTVLQF
EGDRHYFYRILRSIKNRFGSTAELGIYEMRSDGLIAVENPSQVLVNEDNAELSGVAVAAAIEGARPFLIETQALVSTAAY
GTPQRSSTGFDTRRLNMLLAVLEKRVGFKLGQKDVFLNIAGGIRVSDPAIDLSVIAAVLSSNVDTGIERSVCLTGEVGLS
GEIRPVTRIAQRISEAQKLGFERMIVPAANVKGLDKKGITIELVPVKRVEEALRALFG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=323836 C7Y71_RS08720 WP_111898220.1 2159485..2160861(+) (radA) [Pseudoprevotella muciniphila strain E39]
GTGGCACAAAAGTCAAAAACCGTTTTCGTCTGCTCAAATTGCGGCTACGATGCGCCGAAATGGCAGGGCAAATGCCCCAG
TTGCGGACAGTGGAACACGTTCAAGGAGATGACCATAATGCCGGAACGTCGCAGCGAGAAGATAGCCTCCGGTGTGCTCG
ATAACGGACATAAGTCGGAGCCCGTGCGTCTGTCTTCCATCTCGGCTGCCGAGGAACCGCGCATCGACACCCATGATACG
GAACTCAACCGTGTGCTTGGTGGCGGACTTGTGCCAGGCTCGCTCACGCTCCTTGGCGGTGAGCCGGGCATCGGCAAATC
CACCCTTCTCCTGCAGACCATCCTCGGTATGCGCGACAAAAACGTGCTCTATGTGAGCGGCGAGGAGAGCGAGCGGCAAA
TCAAGTTGCGCGCCGACAGGCTGAACCATCAGGGCACCGACTGCCTGCTGCTCTGCGAAACGGAGTTGGAGCGCATATTC
GCACACATCAAGAACACGCAGCCCGACATGGTGGTCATAGATTCCATACAGACCATCTTTACCTCCACCATCGACTCTGC
TCCAGGCAATATCACGCAAATCCGGGAATGCACCGCTGCCATACTGAAATATGCAAAAGAAAGCAGTGTTCCCGTCATTC
TGATTGGACACATCACCAAAGACGGCACCATTGCCGGACCGAAAGTGCTGGAACACATTGTCGATACGGTGCTGCAGTTC
GAAGGCGACCGCCACTACTTCTACCGCATCTTGCGAAGCATAAAGAACCGCTTCGGCAGTACGGCAGAACTCGGCATCTA
CGAAATGCGCAGCGATGGACTCATCGCCGTGGAAAATCCTTCGCAAGTGCTCGTAAACGAAGACAATGCCGAACTCAGCG
GCGTGGCTGTTGCTGCTGCCATAGAGGGTGCGCGTCCATTCCTCATCGAGACGCAAGCCCTTGTCAGTACGGCGGCTTAC
GGTACACCGCAACGCTCCAGCACAGGCTTCGACACGCGGCGACTCAATATGCTGCTTGCCGTACTCGAGAAGCGCGTGGG
GTTCAAACTGGGGCAGAAGGACGTCTTCCTCAATATAGCCGGTGGTATCCGCGTGAGCGACCCTGCCATCGACCTGAGCG
TCATTGCAGCCGTGCTTTCGAGCAATGTGGATACAGGCATAGAGCGCAGCGTGTGCCTCACGGGCGAAGTGGGGCTGAGC
GGCGAGATACGTCCCGTTACCCGCATAGCCCAGCGCATCAGCGAGGCACAGAAACTCGGTTTTGAGCGGATGATTGTACC
GGCTGCCAACGTGAAAGGGCTCGACAAGAAAGGCATCACCATAGAACTCGTTCCCGTGAAGCGCGTGGAAGAAGCCTTGC
GCGCCTTGTTCGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(62-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P8E828

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.087

100

0.513
  radA Streptococcus mitis SK321

46.154

99.345

0.459
  radA Streptococcus pneumoniae Rx1

46.154

99.345

0.459
  radA Streptococcus pneumoniae D39

46.154

99.345

0.459
  radA Streptococcus pneumoniae R6

46.154

99.345

0.459
  radA Streptococcus pneumoniae TIGR4

46.154

99.345

0.459
  radA Streptococcus mitis NCTC 12261

45.934

99.345

0.456

Multiple sequence alignment