Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   EEA47_RS17690 Genome accession   NZ_CP033458
Coordinates   487945..489990 (-) Length   681 a.a.
NCBI ID   WP_136977170.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain SNU_SP1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 482945..494990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEA47_RS17680 (EEA47_18340) ylqF 485378..486322 (+) 945 WP_005376521.1 ribosome biogenesis GTPase YlqF -
  EEA47_RS17685 (EEA47_18345) cqsA 486660..487841 (+) 1182 WP_005376522.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  EEA47_RS17690 (EEA47_18350) cqsS 487945..489990 (-) 2046 WP_136977170.1 response regulator Regulator
  EEA47_RS17695 (EEA47_18355) - 490354..490971 (+) 618 WP_017635351.1 HAD family hydrolase -
  EEA47_RS17700 (EEA47_18360) tnpA 491069..491332 (-) 264 Protein_440 IS200/IS605 family transposase -
  EEA47_RS17705 (EEA47_18365) - 491519..492067 (-) 549 WP_005376525.1 GNAT family N-acetyltransferase -
  EEA47_RS17710 (EEA47_18370) - 492339..493463 (+) 1125 WP_268208494.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78222.77 Da        Isoelectric Point: 5.2226

>NTDB_id=323830 EEA47_RS17690 WP_136977170.1 487945..489990(-) (cqsS) [Vibrio alginolyticus strain SNU_SP1]
MDSIRKVYQYAEPNLTLVGWMGFLGFPLYYFVWEFAFPQAYENLSLRLFCSLLFFGIIFRNRLSSTWRDYVPIYYQVTIT
LCLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWVAKGFHLDLTMDWTHVPIFLFIY
VFGNLFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSILPNMKEAGKEQYVMSVEDVTLLREVSQDAMN
IIQSGNETIDLLLTSIDENRVSRSSFKKYSVHSVVEQAIESFSYKRATDRFAISLDARSEFEFLGSDTLLKYVMYNLFKN
AFHHRKSEDFHIHVSMISSERFNQIVVTDNGAGIAPDVLRNIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIECQSQLG
EWSQFTLTFPLTTSDTVTEIKNDLTKLKTILTVTSQDILVSKVTDISRFMGFDSTILDANQVLKKKEYEFEFDLIFIDLE
SLDPRANQLDRLESLLSFTEARIVYLFEHHPTQRARKAAYEPIWIETQAWLLNTKLTIERLLYDSSYVSTPTASVTLDNS
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQKEDGQQALDTLEQEDVDLILMDIEMPIMDGVEASRRIRSSDKNYASVPI
IAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=323830 EEA47_RS17690 WP_136977170.1 487945..489990(-) (cqsS) [Vibrio alginolyticus strain SNU_SP1]
ATGGACTCGATACGTAAGGTTTATCAATATGCAGAACCAAACCTAACTCTCGTTGGCTGGATGGGGTTTCTTGGCTTTCC
GCTGTACTACTTTGTCTGGGAGTTTGCCTTTCCACAGGCTTATGAAAATTTATCTCTTAGATTGTTTTGCTCGTTATTGT
TTTTCGGCATCATTTTTAGAAACCGCTTATCATCGACTTGGAGAGATTATGTTCCTATTTACTACCAAGTGACGATAACG
CTGTGCTTACCGTTTTTCTTTTTTTATATGTTACTGATGAATGACTGGTCCAATGTATGGGTTATGTCGTTTATGTCTGC
AATTTTCTTACACATTTTACTGGTTCATGTTACTAGGGTCATGTTTGCTCAAACCTTTGCTGGGATAGGTTTAGCAACAT
TCTTCGCTTGGGTTGCAAAAGGGTTCCATCTTGACTTGACCATGGATTGGACTCATGTGCCAATCTTTCTGTTTATTTAT
GTCTTCGGTAATTTGTTCTATTTTCGTAACCAAGTTGAACATGAAGCGAAAGTCTCGCTGGCAAAATCATTCGGGGCAGG
GATCGCACATGAAATGCGTAACCCGTTGAGTGGGCTTTGCACTTCAATAGATGTTATCCAGTCGATCTTGCCCAACATGA
AAGAGGCAGGAAAAGAGCAGTACGTCATGAGTGTAGAGGATGTCACCTTATTACGTGAAGTGAGTCAGGATGCAATGAAC
ATTATCCAATCGGGTAATGAAACCATCGATTTATTGCTAACTTCGATTGATGAAAATCGAGTTTCTCGTTCTAGCTTCAA
AAAATATTCAGTTCACTCGGTCGTTGAACAGGCAATTGAAAGCTTCAGTTATAAACGTGCCACTGATCGATTTGCCATAT
CGCTGGATGCGAGAAGTGAGTTTGAGTTTCTAGGTAGTGATACGTTACTTAAATACGTTATGTATAACCTCTTCAAGAAT
GCCTTCCATCACCGTAAATCTGAAGATTTTCACATACATGTATCCATGATAAGTTCAGAACGCTTTAATCAAATTGTTGT
AACCGATAATGGTGCTGGCATTGCTCCTGATGTTCTACGCAATATCTTTCAAGACTTTTACACCACTGGCAAATCAGGAA
GTTATGGTTTGGGTCTACCGTTTTGTAAAAAAGTCATGCGTTCATTTGGGGGGAACATTGAGTGTCAATCTCAGTTAGGG
GAGTGGTCTCAATTTACATTAACTTTCCCACTAACGACATCTGATACCGTTACTGAAATCAAAAACGATCTGACTAAACT
CAAAACCATTCTAACGGTGACTAGCCAAGATATCTTGGTGTCTAAAGTAACAGATATTAGCCGTTTTATGGGCTTTGACT
CGACGATTTTAGATGCCAACCAAGTACTCAAAAAGAAAGAGTACGAGTTCGAATTCGATCTGATTTTTATCGATCTTGAG
AGCTTAGATCCAAGAGCAAACCAATTGGATAGATTAGAATCTCTCTTGTCTTTCACTGAAGCACGCATCGTTTATCTTTT
TGAGCATCATCCGACTCAGAGAGCACGCAAGGCTGCATATGAACCTATTTGGATCGAAACGCAAGCCTGGTTATTGAATA
CTAAACTAACTATTGAGCGTCTCTTATATGATTCAAGCTATGTATCGACACCAACGGCCTCGGTGACGTTAGATAATTCA
AATAAGCGCACAATTATGGTCGTGGATGATAATGAATCTTTGCGTAAATTCACGGCAATGTTACTTGAAAAGCAAGGCTT
TGAAGTGATTCAGAAAGAAGATGGGCAGCAGGCTCTGGATACACTAGAGCAAGAAGATGTTGATCTCATTCTGATGGATA
TCGAAATGCCAATTATGGATGGTGTAGAAGCGTCTAGGCGAATTCGAAGCTCGGATAAAAACTATGCGTCGGTACCTATT
ATTGCACATACAGGGGATAGTTCACCTGTCACGTTGGACAAAATTGGGTCTTCGGGTATGTCTGACTTCATCGTAAAACC
GGCGGATAAAAATCGCTTGTTCGATAAAATCGCAAACTGGATCTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-412)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

50.073

100

0.504

Multiple sequence alignment