Detailed information NTG0323798

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EEA47_RS06410
• Genome accession: NZ_CP033457
• Coordinates: 1357514..1358500 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain SNU_SP1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1352514..1363500

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EEA47_RS06395 (EEA47_06620)	recA	1353059..1354102 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
EEA47_RS06400 (EEA47_06625)	pncC	1354303..1354785 (-)	483	WP_065274846.1	nicotinamide-nucleotide amidase	-
EEA47_RS06405 (EEA47_06630)	mutS	1354870..1357431 (+)	2562	WP_065274847.1	DNA mismatch repair protein MutS	-
EEA47_RS06410 (EEA47_06635)	rpoS	1357514..1358500 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
EEA47_RS06415 (EEA47_06640)	-	1358581..1359504 (-)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
EEA47_RS06420 (EEA47_06645)	-	1359518..1360144 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EEA47_RS06425 (EEA47_06650)	surE	1360144..1360920 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
EEA47_RS06430 (EEA47_06655)	truD	1360920..1361963 (-)	1044	WP_213908002.1	tRNA pseudouridine(13) synthase TruD	-
EEA47_RS06435 (EEA47_06660)	ispF	1362009..1362485 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EEA47_RS06440 (EEA47_06665)	ispD	1362500..1363207 (-)	708	WP_213908003.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EEA47_RS06445 (EEA47_06670)	ftsB	1363209..1363490 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=323798 EEA47_RS06410 WP_005380887.1 1357514..1358500(-) (rpoS) [Vibrio alginolyticus strain SNU_SP1]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=323798 EEA47_RS06410 WP_005380887.1 1357514..1358500(-) (rpoS) [Vibrio alginolyticus strain SNU_SP1]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854