Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EEA47_RS06280 Genome accession   NZ_CP033457
Coordinates   1335348..1335866 (-) Length   172 a.a.
NCBI ID   WP_005379945.1    Uniprot ID   A0AAW7A9V7
Organism   Vibrio alginolyticus strain SNU_SP1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1330348..1340866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEA47_RS06255 (EEA47_06475) rimM 1330437..1330985 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  EEA47_RS06260 (EEA47_06480) rpsP 1331015..1331263 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  EEA47_RS06265 (EEA47_06485) ffh 1331473..1332855 (-) 1383 WP_005385423.1 signal recognition particle protein -
  EEA47_RS06270 (EEA47_06490) - 1333080..1333874 (+) 795 WP_005379950.1 inner membrane protein YpjD -
  EEA47_RS06275 (EEA47_06495) - 1333999..1335279 (+) 1281 WP_005379948.1 HlyC/CorC family transporter -
  EEA47_RS06280 (EEA47_06500) luxS 1335348..1335866 (-) 519 WP_005379945.1 S-ribosylhomocysteine lyase Regulator
  EEA47_RS06285 (EEA47_06505) - 1335951..1336556 (-) 606 WP_005379943.1 hypothetical protein -
  EEA47_RS06290 (EEA47_06510) gshA 1336580..1338148 (-) 1569 WP_268207507.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19132.87 Da        Isoelectric Point: 4.7221

>NTDB_id=323795 EEA47_RS06280 WP_005379945.1 1335348..1335866(-) (luxS) [Vibrio alginolyticus strain SNU_SP1]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNDDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=323795 EEA47_RS06280 WP_005379945.1 1335348..1335866(-) (luxS) [Vibrio alginolyticus strain SNU_SP1]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAATGCACCCGCTGTACGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGACTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGATGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGCCTGATTGGCACACCATCAGAGCAGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGATGTGCTGAAGGTAGAAAGTCAGAATAAGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment