Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   EEA47_RS06005 Genome accession   NZ_CP033457
Coordinates   1264326..1267712 (+) Length   1128 a.a.
NCBI ID   WP_005380036.1    Uniprot ID   A0A2I3C928
Organism   Vibrio alginolyticus strain SNU_SP1     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1259326..1272712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEA47_RS05985 (EEA47_06200) erpA 1259683..1260024 (-) 342 WP_005380031.1 iron-sulfur cluster insertion protein ErpA -
  EEA47_RS05990 (EEA47_06205) hemL 1260271..1261566 (+) 1296 WP_005380032.1 glutamate-1-semialdehyde 2,1-aminomutase -
  EEA47_RS05995 (EEA47_06210) - 1261912..1262997 (+) 1086 WP_005386541.1 AI-2E family transporter -
  EEA47_RS06000 (EEA47_06215) rsmC 1263074..1264099 (+) 1026 WP_025768200.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  EEA47_RS06005 (EEA47_06220) chiS 1264326..1267712 (+) 3387 WP_005380036.1 response regulator Regulator
  EEA47_RS06010 (EEA47_06225) - 1268494..1270176 (+) 1683 WP_005380037.1 ABC transporter substrate-binding protein -
  EEA47_RS06015 (EEA47_06230) - 1270347..1271333 (+) 987 WP_005380038.1 ABC transporter permease -
  EEA47_RS06020 (EEA47_06235) - 1271336..1272361 (+) 1026 WP_047102642.1 ABC transporter permease -

Sequence

Protein


Download         Length: 1128 a.a.        Molecular weight: 126832.47 Da        Isoelectric Point: 5.4999

>NTDB_id=323790 EEA47_RS06005 WP_005380036.1 1264326..1267712(+) (chiS) [Vibrio alginolyticus strain SNU_SP1]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQIIDYFEARETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGNDIEESRKNAQQRYIEGSGDQIKTSTLPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDINGNVTYSINKDDNYGTNLLSGPYKDSALGKTFKRLADDVTERRKVNEDYTPVIVSDFELEGGKSVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLAADANRESSINTLLVGNDHQPRTINTKQDDIKNSLEVIDKALSGAFGVGTYTNGLGEE
IIAAYAPIETRGVIWALVVQLPENEAFARIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWVAEKVSAGDLDD
TSFNTVRKDEIGRLALSFERMQRSIREKIQTIKKQNEELESNIQIIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLASGANGAIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLGSATRLVLELSSHLLGSKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISANVVDDHVRVQVVDTGQGIPAEQLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASEEEIQATQTLAAHGHFQIPEVNVENSEDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCSELRETYDHAELPIIM
LTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKAEMRHMENKVLESELRQRAVVEASLLETQGRLLEQLE
SAPEAIICLREDKRIRFANEAACKLFKRSLEQLKRSSADELIAPKYLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDIMYIFNVGGGASAARIHNLETAVEVLSSYAFDGDKDQLQKLKELGGEFTRLADKALGNKKDKQELMREVLVDAMTHA
LEYWESVTGESKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPERAYIEAQRD
KLQRLLTS

Nucleotide


Download         Length: 3387 bp        

>NTDB_id=323790 EEA47_RS06005 WP_005380036.1 1264326..1267712(+) (chiS) [Vibrio alginolyticus strain SNU_SP1]
ATGTTTAAATTCTACAAAAAACAGAAATTTAAGCGCCTTCAGAGTACACTGATGACCGCATTTCTGGTGCTCAGTATCAC
ACCTCTTACCATTACTGCGATCTTTTTCTTGCAGTCCCACAGTAAAGATCTGCAAGAACAAAGCACCTCACACTTACTGT
CTGTTCGAGATACAAAACAGCAGCAAATCATCGACTACTTTGAGGCACGAGAAACCGAAGTCATGGGCTTTGTGCGCTCA
GAGTTGGCTTACGCCAGTGGTGGCCGATTCTACGGTCTCGTCAATGCTTTTAGTCGTTTAGGCAATGATATTGAAGAGTC
TCGTAAAAACGCCCAACAGCGCTACATCGAGGGCAGCGGAGACCAAATCAAAACCTCAACGTTACCCGAGTCATCCAACT
ATGTAGGAAGTGAACGTTACCGGCTTTTACATAAACGCTATCATTGGGCCTACTTAGAGCTCCTCAAGCGCTCTGATTTT
AATGACATTTTGCTGGTAGACATCAATGGTAACGTCACCTACTCGATCAACAAAGACGATAACTACGGAACGAACTTGTT
ATCAGGCCCCTACAAAGACTCGGCACTTGGCAAAACTTTCAAGCGTCTCGCCGATGATGTGACTGAACGTCGAAAAGTAA
ACGAAGACTACACTCCTGTGATTGTGTCTGACTTCGAGCTGGAAGGGGGGAAATCAGTCGCTTGGCTAGGTGCACCAATT
GTTCAGCAAGGTTATCTACACAGCTATGCCATGTTCCGCTTGCCAAATAATGGCATCACTAAGTTAGCCGCAGACGCCAA
CCGAGAGTCATCAATTAACACCTTGCTGGTTGGAAATGATCACCAACCTCGCACAATTAACACGAAACAAGACGACATTA
AGAACAGTTTAGAAGTGATCGATAAAGCACTCTCTGGTGCATTTGGTGTCGGCACTTACACAAACGGTTTAGGTGAAGAG
ATCATCGCGGCTTATGCACCGATTGAAACTCGTGGTGTGATTTGGGCGCTCGTCGTACAGTTACCAGAAAACGAAGCTTT
CGCTCGTATACATCAACTCGAAAAACTATTCGTTATCGCTATGTTGATCGCCATTATCCTTGTGGTGATCGCTTCTCACT
ATTTATCAAACTTTATCACTTCTCCGTTGCTGAAATTGACTTGGGTTGCCGAAAAGGTCTCTGCAGGGGATCTTGATGAC
ACGTCTTTTAATACGGTTCGTAAAGATGAAATTGGTCGGCTTGCGTTAAGCTTTGAACGAATGCAACGCTCTATTCGAGA
GAAGATTCAAACCATTAAGAAGCAAAATGAAGAACTAGAAAGCAACATACAGATCATTCAGAAACAGAATGAAGAACTGC
AATTGGCCGATAAATTAAAAGATGAGTTCTTAGCCACGACTTCTCATGAACTTCGTACACCGTTACACGGCATGGTCGGG
ATTGCTGAAACCTTAGCGTCCGGCGCCAATGGCGCGATCCCCGCTAGCCAGAAATATCAGCTTGATATCATCATTAAAAG
TGGTCAGCGTCTCGCTAATCTAGTCGATGACTTGTTGGATTATCATAAAATGCGTTATGGAAGCATGGATATCCAGAAAT
CAGCAGTGAGTTTGGGCAGTGCAACACGATTGGTTTTAGAGCTTTCTAGCCATTTACTTGGAAGTAAAACCATCCGCATC
ATCAACCAAGTCCCAGCGGATTTAAAAGCAGTGTCAGCTGACCCGCAACGCCTTGAACAAGTGCTATATAACCTGATTGG
CAATGCGATTAAATACACCTCAGAAGGTAAAATTGTTATCTCCGCTAATGTGGTAGATGATCATGTACGCGTACAAGTCG
TGGATACTGGACAAGGAATTCCCGCAGAACAACTTGAACATATTTTTGAACCACTTATCCAAGCAGGGCAAGACGCGAGC
CGTTATCGTCAAGGTGCAGGACTTGGGCTCTCCATTAGCCGTCAATTGATCGAATTAATGGGAGGCTCGTTATACGTCAG
TAGCCAACCAATGGTCGGAACTACCTTCAGTTTCACTTTACCGCTCGCCAGTGAAGAAGAAATCCAAGCAACCCAGACTC
TAGCTGCGCACGGGCACTTCCAAATTCCTGAAGTTAATGTAGAGAACAGTGAAGACTTATCACTTCCAGAGAACCCAGAC
GGCCCGTTACTGTATGTTGCTGACGATGAACCAGTAAACTTACGCGTGCTTGAAAGCTTTTTACGTTTAGAGGGCTATCG
TGTGCGTACTGTCTCCGATGGGCCAGAAACGTTAGCGCTCGTCGAGCAAGAGAAGCCGGAACTTCTGTTATTGGATATCA
TGATGCCAGGCATGAGCGGCTACCAAGTTTGTAGTGAACTACGTGAAACCTATGATCATGCCGAGTTGCCAATCATTATG
CTCACCGCACTCAGTCAAACAGAAGATCGTGTAAGAGGTTTTGAGGCAGGAGCCAACGACTATTTATCGAAACCATTTAA
TAAACAAGAGTTGGCGGCACGTATCCAAGCGCATTTAACGGCAAGTAAAGCAGAAATGCGCCATATGGAAAACAAAGTGC
TAGAGTCTGAACTTAGACAGCGTGCAGTCGTTGAAGCAAGCTTACTTGAGACTCAAGGTCGTTTGTTGGAACAGCTAGAA
TCGGCTCCTGAAGCTATCATCTGTCTACGTGAAGACAAGCGTATTCGCTTTGCTAACGAAGCTGCTTGTAAGCTATTCAA
GCGCAGCTTAGAACAGCTAAAGCGTTCATCTGCTGATGAGCTGATTGCCCCTAAATATCTGACCGTCAAACAACCTCATT
ACTGTGGCAAGATTGATATCTATATTGAAGATATTCGTCAGAACATCGAAGCAGACATTCTTAAGCTCCCTGAAGGTTCA
GGGTTAGATATCATGTACATCTTTAATGTCGGCGGTGGAGCCAGTGCCGCTCGCATACATAATCTAGAAACCGCCGTAGA
AGTGCTTTCAAGTTATGCATTTGATGGTGACAAAGACCAATTGCAAAAGCTAAAAGAGCTTGGCGGAGAATTTACGCGCC
TTGCAGACAAAGCGCTCGGTAATAAAAAAGACAAGCAAGAACTTATGCGAGAAGTTCTAGTAGACGCAATGACACATGCT
TTAGAGTATTGGGAATCTGTAACGGGTGAAAGTAAGTTCGCATTTGCAGAGCAAAGTGGCTTGTGGCGCGTTTATCTAGA
CCGTAGTACTTTGCAAACACGCACTTTAGATAAATACATGCGTATAGAAACATTACCCAAAACACCACGTTGGAGAACGG
TGCTAAGCTCGATAGAGTTCATTCTCGAACACTGCAAAGAACAGAGCCCCGAGAGAGCATACATAGAAGCACAACGAGAT
AAACTACAGCGACTATTGACCAGCTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(574-683)

His Kinase A (phospho-acceptor) domain (HisKA)

(460-525)

HAMP domain (HAMP)

(375-427)

PAS fold (PAS)

(876-924)

Response regulator receiver domain (Response_reg)

(726-836)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3C928

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

76.439

100

0.765

Multiple sequence alignment