Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   EEA47_RS01110 Genome accession   NZ_CP033457
Coordinates   259582..261108 (-) Length   508 a.a.
NCBI ID   WP_025766673.1    Uniprot ID   A0AAW7A8R2
Organism   Vibrio alginolyticus strain SNU_SP1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 254582..266108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEA47_RS01090 (EEA47_01095) - 254600..256030 (-) 1431 WP_025766678.1 lipopolysaccharide biosynthesis protein -
  EEA47_RS01095 (EEA47_01100) - 256023..257195 (-) 1173 WP_025766677.1 glycosyltransferase -
  EEA47_RS01100 (EEA47_01105) - 257207..258391 (-) 1185 WP_268206836.1 glycosyltransferase -
  EEA47_RS01105 (EEA47_01110) - 258549..259607 (-) 1059 WP_213907951.1 glycosyltransferase family 4 protein -
  EEA47_RS01110 (EEA47_01115) luxO 259582..261108 (-) 1527 WP_025766673.1 sigma-54-dependent transcriptional regulator Regulator
  EEA47_RS01115 (EEA47_01120) - 261417..261797 (-) 381 WP_005377636.1 Hpt domain-containing protein -
  EEA47_RS01120 (EEA47_01125) - 261809..262495 (-) 687 WP_025766671.1 AAA family ATPase -
  EEA47_RS01125 (EEA47_01130) - 262495..264597 (-) 2103 WP_213907952.1 SLBB domain-containing protein -
  EEA47_RS01130 (EEA47_01135) - 264594..265460 (-) 867 WP_017820663.1 OmpA family protein -
  EEA47_RS01135 (EEA47_01140) - 265487..265807 (-) 321 WP_213907953.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56610.46 Da        Isoelectric Point: 5.7925

>NTDB_id=323787 EEA47_RS01110 WP_025766673.1 259582..261108(-) (luxO) [Vibrio alginolyticus strain SNU_SP1]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKYFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVNHLPAQLTKKSKVTKTTTPA
HVAQESANIAPITPPPGYTEEPSPSAVEPSITAAEQPGTPSSAATSPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=323787 EEA47_RS01110 WP_025766673.1 259582..261108(-) (luxO) [Vibrio alginolyticus strain SNU_SP1]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTGAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGAAGCGATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGTTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCACACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACATCAGTCGCATTGCACCTCAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAGTCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGCCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTGTTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCCGTCCACCGCCAGAG
CGACCGTAAAGACAAGCCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGTACGCTTTTTCTT
GATGAGCTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGTTTTCTACAAACGGGCACTTACACCCCTCTTGG
TGGCACTCGAGAAATGAAAGTAGATGTGAGAATCATTTGTGCCACTAACCGAGATCCATTAACAGAGGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATCGATATGCCCCCATTACGTGAACGAGGAAGTGACATT
GTCACGCTTGCCAAGTACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ACGACGAAAAAGTCACGGTGAACCACCTACCCGCTCAACTTACTAAAAAGTCTAAAGTGACGAAAACAACGACGCCTGCG
CATGTTGCTCAAGAGTCAGCAAACATTGCACCAATCACACCACCACCTGGTTATACTGAGGAACCTTCACCTTCTGCGGT
CGAACCGTCGATTACCGCAGCGGAGCAGCCTGGTACACCGTCCTCTGCTGCTACCTCACCGTACTTTAACTCTGATGGAA
CCATTCGCCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAAAACGCAATTGCGTACTGTGATGGCAACGTCCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCGACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.047

0.484

Multiple sequence alignment