Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EEA47_RS00190 Genome accession   NZ_CP033457
Coordinates   40422..41843 (-) Length   473 a.a.
NCBI ID   WP_047100708.1    Uniprot ID   A0AAW6ZTF8
Organism   Vibrio alginolyticus strain SNU_SP1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 35422..46843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEA47_RS00165 (EEA47_00165) - 35952..36602 (+) 651 WP_021707633.1 thiopurine S-methyltransferase -
  EEA47_RS00170 (EEA47_00170) purT 36675..37850 (-) 1176 WP_017633939.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  EEA47_RS00175 (EEA47_00175) cdd 37994..38881 (-) 888 WP_005377892.1 cytidine deaminase -
  EEA47_RS00180 (EEA47_00180) - 39313..39990 (-) 678 WP_005377888.1 LrgB family protein -
  EEA47_RS00185 (EEA47_00185) - 39992..40366 (-) 375 WP_005397786.1 CidA/LrgA family protein -
  EEA47_RS00190 (EEA47_00190) sbcB 40422..41843 (-) 1422 WP_047100708.1 exodeoxyribonuclease I Machinery gene
  EEA47_RS00195 (EEA47_00195) - 42000..43373 (-) 1374 WP_047100707.1 L-cystine transporter -
  EEA47_RS00200 (EEA47_00200) - 43574..44263 (-) 690 WP_047100706.1 NAD(P)H-binding protein -
  EEA47_RS00205 (EEA47_00205) cobT 44512..45555 (+) 1044 WP_005377883.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  EEA47_RS00210 (EEA47_00210) - 45555..46361 (+) 807 WP_031778983.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54377.57 Da        Isoelectric Point: 4.8138

>NTDB_id=323786 EEA47_RS00190 WP_047100708.1 40422..41843(-) (sbcB) [Vibrio alginolyticus strain SNU_SP1]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYCYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=323786 EEA47_RS00190 WP_047100708.1 40422..41843(-) (sbcB) [Vibrio alginolyticus strain SNU_SP1]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCAGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGATTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTAGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAGCTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACTGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797

Multiple sequence alignment