Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FH040_RS16535 Genome accession   NZ_CP040927
Coordinates   3395965..3396570 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain YY76-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3390965..3401570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH040_RS16510 (FH040_16515) aes 3391002..3391961 (+) 960 WP_063501955.1 acetyl esterase -
  FH040_RS16515 (FH040_16520) hemH 3391958..3392920 (-) 963 WP_001250088.1 ferrochelatase -
  FH040_RS16525 (FH040_16530) adk 3393156..3393800 (-) 645 WP_001220233.1 adenylate kinase -
  FH040_RS16530 (FH040_16535) htpG 3393981..3395855 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  FH040_RS16535 (FH040_16540) recR 3395965..3396570 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FH040_RS16540 (FH040_16545) ybaB 3396570..3396899 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FH040_RS16545 (FH040_16550) dnaX 3396952..3398883 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  FH040_RS16550 (FH040_16555) apt 3399012..3399563 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FH040_RS16555 (FH040_16560) ybaN 3399716..3400093 (-) 378 WP_001188905.1 DUF454 family protein -
  FH040_RS16560 (FH040_16565) priC 3400163..3400690 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  FH040_RS16565 (FH040_16570) rsmS 3400704..3400865 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=323768 FH040_RS16535 WP_001195025.1 3395965..3396570(-) (recR) [Escherichia coli strain YY76-1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=323768 FH040_RS16535 WP_001195025.1 3395965..3396570(-) (recR) [Escherichia coli strain YY76-1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCACAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment