Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FH040_RS08250 Genome accession   NZ_CP040927
Coordinates   1742989..1744413 (-) Length   474 a.a.
NCBI ID   WP_148245888.1    Uniprot ID   -
Organism   Escherichia coli strain YY76-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1737989..1749413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH040_RS08220 (FH040_08220) yeeZ 1738044..1738868 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  FH040_RS08225 (FH040_08225) yeeY 1738914..1739843 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  FH040_RS08230 (FH040_08230) yoeI 1740058..1740120 (+) 63 WP_010723108.1 membrane protein YoeI -
  FH040_RS08235 (FH040_08235) plaP 1740110..1741468 (+) 1359 WP_024198437.1 putrescine/proton symporter PlaP -
  FH040_RS08240 (FH040_08240) tsuA 1741647..1742705 (+) 1059 WP_074511709.1 thiosulfate utilization transporter TsuA/YeeE -
  FH040_RS08245 (FH040_08245) tsuB 1742719..1742946 (+) 228 WP_096310218.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FH040_RS08250 (FH040_08250) sbcB 1742989..1744413 (-) 1425 WP_148245888.1 exodeoxyribonuclease I Machinery gene
  FH040_RS08255 (FH040_08255) - 1744595..1745773 (+) 1179 WP_025404398.1 site-specific integrase -
  FH040_RS08260 (FH040_08260) - 1745754..1745945 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  FH040_RS08265 (FH040_08265) - 1746023..1746367 (-) 345 WP_024171809.1 hypothetical protein -
  FH040_RS08270 (FH040_08270) - 1746396..1746563 (-) 168 WP_000545737.1 hypothetical protein -
  FH040_RS08280 (FH040_08280) - 1746947..1747228 (-) 282 WP_000002117.1 ASCH domain-containing protein -
  FH040_RS24005 (FH040_08285) - 1747221..1747925 (-) 705 WP_148245889.1 DUF551 domain-containing protein -
  FH040_RS08290 (FH040_08290) - 1747927..1748226 (-) 300 WP_094336379.1 hypothetical protein -
  FH040_RS24010 - 1748568..1748780 (-) 213 Protein_1618 hypothetical protein -
  FH040_RS08300 (FH040_08300) - 1748777..1748941 (-) 165 WP_001214456.1 DUF2737 family protein -
  FH040_RS08305 (FH040_08305) - 1748952..1749245 (-) 294 WP_148245891.1 phage anti-RecBCD protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54335.60 Da        Isoelectric Point: 5.3476

>NTDB_id=323748 FH040_RS08250 WP_148245888.1 1742989..1744413(-) (sbcB) [Escherichia coli strain YY76-1]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=323748 FH040_RS08250 WP_148245888.1 1742989..1744413(-) (sbcB) [Escherichia coli strain YY76-1]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGAGAACCCGAAGTCTTTTACTGCAAGCCCGCTG
ATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTAGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAATATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.362

99.156

0.589