Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FH040_RS05070 Genome accession   NZ_CP040927
Coordinates   1054307..1054822 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain YY76-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1049307..1059822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH040_RS05025 (FH040_05025) csrA 1049894..1050079 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  FH040_RS05055 (FH040_05055) yqaB 1051537..1052103 (+) 567 WP_000273289.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FH040_RS05060 (FH040_05060) yqaA 1052100..1052528 (+) 429 WP_001287454.1 YqaA family protein -
  FH040_RS05065 (FH040_05065) gshA 1052601..1054157 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  FH040_RS05070 (FH040_05070) luxS 1054307..1054822 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FH040_RS05075 (FH040_05075) emrB 1054886..1056424 (-) 1539 WP_042962729.1 multidrug efflux MFS transporter permease subunit EmrB -
  FH040_RS05080 (FH040_05080) emrA 1056441..1057613 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FH040_RS05085 (FH040_05085) emrR 1057740..1058270 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FH040_RS05090 (FH040_05090) ygaH 1058361..1058696 (-) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  FH040_RS05095 (FH040_05095) ygaZ 1058686..1059423 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=323738 FH040_RS05070 WP_001130211.1 1054307..1054822(+) (luxS) [Escherichia coli strain YY76-1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=323738 FH040_RS05070 WP_001130211.1 1054307..1054822(+) (luxS) [Escherichia coli strain YY76-1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731