Detailed information NTG0323735

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FH040_RS04790
• Genome accession: NZ_CP040927
• Coordinates: 1001488..1002480 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain YY76-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 996488..1007480

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FH040_RS04760 (FH040_04760)	ispD	996549..997259 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FH040_RS04765 (FH040_04765)	ispF	997259..997738 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FH040_RS04770 (FH040_04770)	truD	997735..998784 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
FH040_RS04775 (FH040_04775)	surE	998765..999526 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FH040_RS04780 (FH040_04780)	pcm	999520..1000146 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FH040_RS04785 (FH040_04785)	nlpD	1000331..1001425 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FH040_RS04790 (FH040_04790)	rpoS	1001488..1002480 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FH040_RS04795 (FH040_04795)	ygbN	1002574..1003938 (-)	1365	WP_000104441.1	GntP family transporter	-
FH040_RS04800 (FH040_04800)	ygbM	1004027..1004803 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
FH040_RS04805 (FH040_04805)	ygbL	1004808..1005446 (-)	639	WP_001278994.1	aldolase	-
FH040_RS04810 (FH040_04810)	otnK	1005443..1006705 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=323735 FH040_RS04790 WP_000081550.1 1001488..1002480(+) (rpoS) [Escherichia coli strain YY76-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=323735 FH040_RS04790 WP_000081550.1 1001488..1002480(+) (rpoS) [Escherichia coli strain YY76-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715