Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EAV92_RS16835 Genome accession   NZ_CP033433
Coordinates   3675944..3677311 (-) Length   455 a.a.
NCBI ID   WP_123042164.1    Uniprot ID   A0A3G3K0X6
Organism   Cohnella candidum strain 18JY8-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3670944..3682311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAV92_RS16815 (EAV92_16815) - 3671336..3672397 (-) 1062 WP_277424239.1 glycoside hydrolase family 76 protein -
  EAV92_RS16820 (EAV92_16820) - 3672608..3673768 (-) 1161 WP_241158297.1 GntR family transcriptional regulator -
  EAV92_RS16825 (EAV92_16825) pssA 3673941..3674684 (-) 744 WP_123042162.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  EAV92_RS16830 (EAV92_16830) disA 3674828..3675928 (-) 1101 WP_123042163.1 DNA integrity scanning diadenylate cyclase DisA -
  EAV92_RS16835 (EAV92_16835) radA 3675944..3677311 (-) 1368 WP_123042164.1 DNA repair protein RadA Machinery gene
  EAV92_RS24585 - 3677366..3677542 (-) 177 WP_164472818.1 hypothetical protein -
  EAV92_RS16840 (EAV92_16840) clpC 3677696..3680140 (-) 2445 WP_123042165.1 ATP-dependent protease ATP-binding subunit ClpC -
  EAV92_RS16845 (EAV92_16845) - 3680180..3681202 (-) 1023 WP_123043780.1 protein arginine kinase -
  EAV92_RS16850 (EAV92_16850) - 3681267..3681782 (-) 516 WP_123042166.1 UvrB/UvrC motif-containing protein -
  EAV92_RS16855 (EAV92_16855) - 3681811..3682272 (-) 462 WP_123042167.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49273.74 Da        Isoelectric Point: 6.8951

>NTDB_id=323714 EAV92_RS16835 WP_123042164.1 3675944..3677311(-) (radA) [Cohnella candidum strain 18JY8-7]
MAKIKVKFACTECGTESPKWMGKCPGCGAWNTMVEETETVVRAPVGRTEAIRTKEKARSIIDIESGREPRISTGLTELNR
VLGGGLVPGSLLLVGGDPGIGKSTLLLQTSNQLASQGLKVLYVSGEESVRQTKLRADRLGALSDRLFVLCETNLDFIEEA
VAEADPDFLVIDSIQTVYRPDVPSAPGSVAQVRECTAQFMRISKGNGVATVLVGHVTKEGAIAGPRLLEHMVDCVLYFEG
ERHHSYRLLRAVKNRFGSTNEIGIFDMTEDGLREVTNPSELFLSERPLGVSGSSVVASMEGTRPVLVELQALVSPTHFPS
PRRMTSGIDHHRMSLVIAVLEKRMGMFMQNQDAYVNVAGGVKLDEPAADLAAAVSIASSFKDLPTKPYDVIFGEVGLTGE
VRAVSRAEQRVKEAHKLGFKRVILPEQSLKGWQPPDGIRLIGVKTVAEALKAALE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=323714 EAV92_RS16835 WP_123042164.1 3675944..3677311(-) (radA) [Cohnella candidum strain 18JY8-7]
ATGGCTAAGATCAAAGTGAAATTCGCCTGCACCGAATGCGGCACGGAGTCGCCCAAATGGATGGGGAAATGCCCTGGCTG
CGGCGCTTGGAATACAATGGTGGAGGAAACCGAGACGGTGGTGAGGGCGCCGGTCGGCCGGACCGAAGCCATCCGGACGA
AAGAAAAGGCGCGTTCCATCATAGATATAGAGAGCGGCCGCGAACCCCGCATCTCGACGGGGCTGACGGAGCTGAACCGG
GTACTGGGCGGGGGACTCGTGCCGGGCTCCTTGCTGCTCGTCGGGGGAGATCCCGGCATCGGCAAGTCGACCCTGCTGCT
GCAGACGTCCAACCAGTTGGCGTCGCAGGGCCTCAAGGTCCTCTACGTTTCAGGCGAGGAATCGGTCCGCCAGACGAAGC
TGCGGGCGGATCGGCTCGGCGCGCTGTCCGACCGGCTGTTCGTGCTGTGCGAGACGAACCTGGACTTCATCGAAGAAGCC
GTGGCCGAAGCCGATCCGGATTTCCTCGTGATCGACTCGATCCAGACGGTGTACCGGCCCGACGTTCCGTCCGCGCCCGG
CAGCGTGGCTCAAGTCCGGGAATGTACCGCCCAATTCATGCGCATTTCCAAAGGCAACGGGGTCGCCACCGTGCTGGTCG
GCCACGTGACCAAAGAAGGGGCCATCGCCGGCCCTCGCTTGCTGGAACATATGGTGGATTGTGTGCTATATTTCGAGGGT
GAACGGCACCATTCCTACCGGCTGCTCCGCGCGGTCAAAAACCGGTTCGGCTCGACGAACGAAATCGGCATTTTCGACAT
GACGGAGGACGGCCTGCGGGAAGTGACGAATCCTTCCGAGCTCTTCCTGTCCGAGCGTCCGCTCGGGGTGTCGGGATCGT
CGGTCGTCGCCAGCATGGAGGGAACGAGGCCGGTGCTCGTGGAGCTGCAGGCGCTCGTATCCCCGACGCATTTTCCGTCT
CCGCGGCGAATGACTTCGGGCATCGACCATCATCGCATGTCGCTGGTCATCGCGGTGCTGGAGAAAAGAATGGGCATGTT
CATGCAGAACCAAGACGCATACGTCAACGTGGCCGGCGGCGTGAAATTAGACGAGCCCGCCGCGGATTTGGCCGCGGCCG
TCAGCATCGCGTCCAGCTTCAAGGACTTGCCGACGAAGCCTTACGACGTCATTTTCGGAGAAGTCGGGTTGACGGGTGAA
GTCAGGGCGGTGTCGCGGGCGGAACAAAGAGTGAAAGAAGCGCACAAGCTCGGCTTTAAGCGGGTCATCCTTCCGGAACA
AAGCCTGAAAGGCTGGCAGCCTCCGGACGGGATCCGGCTGATCGGCGTGAAGACGGTGGCGGAGGCGTTGAAAGCGGCTT
TGGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(342-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G3K0X6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.939

100

0.664
  radA Streptococcus mitis NCTC 12261

57.428

99.121

0.569
  radA Streptococcus mitis SK321

57.428

99.121

0.569
  radA Streptococcus pneumoniae Rx1

57.206

99.121

0.567
  radA Streptococcus pneumoniae D39

57.206

99.121

0.567
  radA Streptococcus pneumoniae R6

57.206

99.121

0.567
  radA Streptococcus pneumoniae TIGR4

57.206

99.121

0.567

Multiple sequence alignment