Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FHI56_RS06440 Genome accession   NZ_CP040804
Coordinates   1071256..1072926 (+) Length   556 a.a.
NCBI ID   WP_149561285.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LAB813     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1066256..1077926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS06410 (FHI56_06410) - 1066641..1067402 (+) 762 WP_149561281.1 hypothetical protein -
  FHI56_RS06415 (FHI56_06415) xseA 1067589..1068917 (+) 1329 WP_064524648.1 exodeoxyribonuclease VII large subunit -
  FHI56_RS06420 (FHI56_06420) - 1068907..1069122 (+) 216 WP_002884058.1 exodeoxyribonuclease VII small subunit -
  FHI56_RS06425 (FHI56_06425) - 1069122..1069994 (+) 873 WP_149561282.1 polyprenyl synthetase family protein -
  FHI56_RS06430 (FHI56_06430) - 1069987..1070814 (+) 828 WP_149561283.1 TlyA family RNA methyltransferase -
  FHI56_RS06435 (FHI56_06435) - 1070801..1071247 (+) 447 WP_149561284.1 arginine repressor -
  FHI56_RS06440 (FHI56_06440) recN 1071256..1072926 (+) 1671 WP_149561285.1 DNA repair protein RecN Machinery gene
  FHI56_RS06445 (FHI56_06445) - 1072996..1073838 (+) 843 WP_149561286.1 DegV family protein -
  FHI56_RS06450 (FHI56_06450) - 1073831..1074706 (+) 876 WP_149561287.1 SGNH/GDSL hydrolase family protein -
  FHI56_RS06455 (FHI56_06455) - 1074699..1075271 (+) 573 WP_064524638.1 YpmS family protein -
  FHI56_RS06460 (FHI56_06460) - 1075408..1075683 (+) 276 WP_002884048.1 HU family DNA-binding protein -
  FHI56_RS06465 (FHI56_06465) - 1075743..1075943 (+) 201 WP_002883994.1 hypothetical protein -
  FHI56_RS06470 (FHI56_06470) - 1076005..1076940 (-) 936 WP_045772084.1 dihydroorotate oxidase -
  FHI56_RS06475 (FHI56_06475) - 1077196..1077888 (+) 693 WP_002884137.1 phosphoglycerate mutase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62337.34 Da        Isoelectric Point: 4.5371

>NTDB_id=323575 FHI56_RS06440 WP_149561285.1 1071256..1072926(+) (recN) [Streptococcus salivarius strain LAB813]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSASKTEIQGFFSIEQNPALVSIL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTTLKAVGHFLVDIHGQHDQEELMKPALHITMLDAFGDKEFFQTKKE
YQEYFDRYRELRKAVLEKQKNEQEHKARIEMLAFQISEIEAVSLKSGEDLALMQERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSGNLSEAYYVLEDVTKQLGDFLDNLDFDAGRLQEIEHRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQTARHQIATALEAEIKSELCDLYMDKADFKVTFTK
GKFNRDGSEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVQEIAKMLAGDNVTEAALSQARALLKVDDSL

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=323575 FHI56_RS06440 WP_149561285.1 1071256..1072926(+) (recN) [Streptococcus salivarius strain LAB813]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAGATTTCTCTAAACTTTGAGAATGGTATGACCGTCCT
TACTGGTGAAACAGGTGCTGGTAAGTCCATTATTATAGATGCTATGAATCTTATGTTGGGTGCTAGGGCTTCTAGTGAGG
TCGTCCGTCATTCAGCATCTAAGACTGAAATTCAGGGTTTCTTTTCAATCGAACAAAATCCTGCCTTGGTTAGTATCTTG
GAAGATAATGGGATTCCTGTTGAGGATGAATTGATTATCCGTCGTGAAATCTTCCAAAATGGTAGAAGTGTTAGTCGCAT
CAATGGGCAGATGGTCAATTTAACGACGCTTAAGGCTGTTGGGCACTTCTTGGTAGATATCCATGGACAACATGACCAGG
AAGAGCTTATGAAACCTGCTCTGCATATTACCATGCTTGATGCCTTTGGTGACAAGGAATTTTTCCAGACTAAGAAAGAG
TACCAGGAGTATTTTGACCGCTATCGTGAGTTAAGAAAAGCTGTTCTAGAAAAGCAGAAAAATGAGCAGGAGCATAAGGC
TCGAATTGAAATGCTAGCTTTTCAGATTTCAGAAATTGAAGCAGTCTCTCTAAAATCAGGAGAAGATTTGGCTTTGATGC
AGGAGCGAGACAAGCTTCTTAATCATAAGCAAATTGCTGATACCTTAACAAATGCCTATGTCATGCTGGATAATGAAGAT
TTTTCAAGCCTTTCAAATGTTCGTTCTGCCATGAATGACCTCCAGTCTCTTGAAGAGTATGACTCTGATTACAAAGAACT
CTCTGGAAATCTATCAGAAGCCTATTATGTTCTGGAAGATGTCACTAAGCAACTAGGTGATTTTTTGGATAATCTGGACT
TTGATGCTGGGCGTTTACAAGAGATTGAACACCGCTTAGATACCATTAATGCCATTACTCGTAAATATGGTGGGACTGTC
GATGACGTCTTGGATTATCTGGAAAATTCAAGTAAAGAATACAATCTTCTGACAGGCAACTCTAGCTCGTCAGATGCTAT
GGAACAAGAGCTTAAGCAACTTGAAAAGGACCTGCTTGCGTCTGCGGAGACCCTACAAACAGCACGCCATCAAATTGCTA
CGGCTCTTGAAGCTGAGATTAAGAGCGAGTTGTGTGACCTCTATATGGATAAGGCTGATTTTAAAGTCACCTTTACTAAG
GGGAAATTTAATCGTGATGGTAGTGAGCAGGTTGAGTTTTACATCTCAACCAATCCAGGTGAAGGCTTTAAACCGCTTGT
TAAGGTAGCTTCAGGTGGTGAATTATCACGACTCATGTTAGCGATTAAGTCAGCCTTTGCCCGCAAAGAAGATAAAACAA
GTATCGTCTTTGATGAGGTTGACACTGGCGTTTCAGGACGTGTTGCCCAAGCCATCGCTCAGAAGATTCATAAGATTGGG
AGTCATGGTCAGGTCTTGGCCATCAGTCACCTTCCGCAAGTTATTGCTATTGCTGATTATCAGTTTTTTATTTCTAAGGA
AAGCGATAATGAGACAACAGTCTCTCGTGTTCGTCTTTTGACACCTGAGGAAAGGGTGCAAGAAATCGCTAAGATGTTAG
CAGGTGATAACGTGACGGAGGCTGCCTTGAGCCAAGCAAGAGCTTTGTTAAAGGTGGATGACTCTCTTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.805

100

0.451

Multiple sequence alignment