Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FHI56_RS06385 Genome accession   NZ_CP040804
Coordinates   1061143..1063344 (+) Length   733 a.a.
NCBI ID   WP_045772090.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LAB813     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1056143..1068344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS06355 (FHI56_06355) hflX 1056618..1057856 (+) 1239 WP_149561279.1 GTPase HflX -
  FHI56_RS06360 (FHI56_06360) - 1057849..1058490 (+) 642 WP_004182664.1 cystathionine beta-lyase -
  FHI56_RS06365 (FHI56_06365) rnz 1058522..1059451 (+) 930 WP_002884122.1 ribonuclease Z -
  FHI56_RS06370 (FHI56_06370) - 1059451..1060218 (+) 768 WP_149561280.1 SDR family oxidoreductase -
  FHI56_RS11985 (FHI56_06375) - 1060290..1060427 (+) 138 Protein_1017 class I SAM-dependent methyltransferase -
  FHI56_RS06380 (FHI56_06380) - 1060429..1060833 (+) 405 WP_004182662.1 GNAT family N-acetyltransferase -
  FHI56_RS06385 (FHI56_06385) recJ 1061143..1063344 (+) 2202 WP_045772090.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FHI56_RS06390 (FHI56_06390) - 1063463..1063981 (+) 519 WP_045772089.1 adenine phosphoribosyltransferase -
  FHI56_RS06395 (FHI56_06395) metA 1064154..1065098 (+) 945 WP_004182659.1 homoserine O-succinyltransferase -
  FHI56_RS06400 (FHI56_06400) - 1065171..1065869 (+) 699 WP_004182658.1 DnaD domain-containing protein -
  FHI56_RS06405 (FHI56_06405) nth 1065869..1066513 (+) 645 WP_004182657.1 endonuclease III -
  FHI56_RS06410 (FHI56_06410) - 1066641..1067402 (+) 762 WP_149561281.1 hypothetical protein -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82204.45 Da        Isoelectric Point: 4.3426

>NTDB_id=323574 FHI56_RS06385 WP_045772090.1 1061143..1063344(+) (recJ) [Streptococcus salivarius strain LAB813]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGVTTEEALEDFLKADLSYLHDPYLLHDMDKAVARIRRAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPAQLPDAFAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGQLSDILCHYVYDNEIDTSAKNTLNLDEELQLSELGLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGHLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLEDARVD
GVQLFDFRSKNMALPEGLPTVEEAADTEPAVVLSTLPESATELKEWFEGKDFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSQIFQNLKRLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=323574 FHI56_RS06385 WP_045772090.1 1061143..1063344(+) (recJ) [Streptococcus salivarius strain LAB813]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACATGG
GCTGGCAGAAACAGCAGCCAAGATTGCTTATGAACGTGGCGTGACGACAGAAGAGGCCCTTGAAGACTTTCTAAAGGCTG
ATCTATCATACCTTCATGACCCTTATCTTCTTCATGATATGGACAAGGCGGTTGCTAGAATTCGTCGGGCCATTGAAAAT
TATGAACAAATCTTAGTCTATGGGGACTATGATGCAGATGGGATGACATCAGCATCGATTGTCAAGGAAGCCCTTGAAAT
GATGGGTGCCGAGGCTCGAGTCTATTTGCCCAACCGTTTTACAGATGGTTATGGGCCAAACGAAAGTGTCTATAAGTATT
TCATTGAGCAGGAAGGCATTTCACTTATTGTTACAGTGGATAATGGAGTAGCGGGTAATGAGGCTATTGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCACCATAGTATGCCGGCACAGCTTCCAGATGCCTTTGCCATTGTCCATCC
AGAGCATCCAGATGCCGATTATCCTTTTAAGTATTTGGCAGGATGTGGTGTAGCTTTCAAATTGGCAACGGCCCTCCTTG
AAACTATTCCTACAGAGATGTTGGACTTGGTAGCCATTGGTACCATTGCTGATATGGTTAGCCTTACGGATGAAAATCGT
ATTATGGTCAAGGTCGGCCTGGAAATTCTCAAGACTACTGAGCGTATCGGGCTTCAAGAATTGCTCCGCATTTCAGATGT
GGACCCTACAACGATTTCCGAAGAAACGGTAGGCTTCAAACTGGCTCCTCAACTCAATGCCTTGGGACGCTTAGATGATC
CAAATCCAGCCATTGAACTACTGACCGGGTTTGACGATGAGGAAGCTCAAGCCATTGCTCTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGATGAAGCTATGACCATGGTAGACTTGGACAAACCAGTTCAGGTTTT
GGCCAAGGAAGGTTGGCATCCTGGTGTTCTAGGTATTGTAGCGGGGCGCATCATGGAACAAATCAGCCAGACAGTAGTGG
TTTTGAATATTGAAGATGGTCTGGCTAAGGGTTCAGCCCGTAGTTTGGAATCAATCAATATCTTCCATGCCCTTGATGAC
CACCGAGACATCTTTACTGCTTTTGGAGGACACGCTGGAGCCGCTGGGATGACCCTTCCGGAGGAAAATCTTGGTCAACT
CTCAGATATTTTGTGTCATTATGTCTACGATAATGAGATTGATACAAGTGCCAAAAATACGCTTAATTTAGACGAGGAGC
TCCAACTCAGCGAGCTTGGCTTGGATACTATTAAGAGTCTAGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACAATGGGACAAAATGGAGCCCATCTTAAGTTTAAGGTGAA
GCAAGGCAAGGATAGCTTTGACGTTGTCGCTTTTAATAAAGGTCATTTGCTTCAAGAATTTCAACAAGCTCAAGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATGTTTGGAATGGTCAGACAACGCTACAGCTCATGCTAGAAGATGCGCGTGTGGAT
GGTGTTCAATTATTTGATTTCCGCTCAAAAAATATGGCACTGCCTGAAGGTCTACCAACGGTAGAAGAAGCAGCAGACAC
AGAGCCTGCGGTTGTCCTCAGTACCCTACCTGAATCAGCTACAGAATTAAAAGAGTGGTTTGAAGGTAAAGATTTCCAAG
CTATCTATTTTAAAAATAGTATTAAGGAAGCCTATTATCTGACAGGTTATGGAACAAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTACCAATTCCCAGAATTCGATGTTCGCTATAAATTGGATGAACTCAGTCATTACCTTAAAATCGACAAGAT
TCTTCTGATTAAGATGATTCAAATCTTTGATGAATTGGATTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGTCAGATTTTCCAAAATCTGAAACGACTCGTTAAGTTCCAAGAACTTATGGCT
CTGGGAACTCCACAGGAAATTTATGATTGGCTGTATAAGTAG

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-431)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-731)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.799

100

0.681
  recJ Bacillus subtilis subsp. subtilis str. 168

38.059

100

0.407