Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   D5285_RS10325 Genome accession   NZ_CP033389
Coordinates   2012422..2012898 (+) Length   158 a.a.
NCBI ID   WP_020451568.1    Uniprot ID   A0A6N2GNG1
Organism   Bacillus paralicheniformis strain CBMAI 1303     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2007422..2017898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5285_RS10290 (D5285_10290) - 2007964..2008380 (+) 417 WP_020451562.1 hypothetical protein -
  D5285_RS10295 (D5285_10295) - 2008542..2009519 (+) 978 WP_020451563.1 S9 family peptidase -
  D5285_RS10300 (D5285_10300) - 2009580..2009804 (+) 225 WP_020451564.1 hypothetical protein -
  D5285_RS10310 (D5285_10310) - 2010501..2011097 (+) 597 WP_020451565.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -
  D5285_RS10315 (D5285_10315) - 2011203..2011685 (+) 483 WP_020451566.1 DUF4944 domain-containing protein -
  D5285_RS10320 (D5285_10320) - 2011719..2012291 (+) 573 WP_020451567.1 GNAT family N-acetyltransferase -
  D5285_RS10325 (D5285_10325) rok 2012422..2012898 (+) 477 WP_020451568.1 hypothetical protein Regulator
  D5285_RS22955 - 2013017..2013190 (+) 174 WP_020451569.1 hypothetical protein -
  D5285_RS10330 (D5285_10330) - 2013543..2014163 (-) 621 WP_020451570.1 hypothetical protein -
  D5285_RS10335 (D5285_10335) - 2014724..2015308 (+) 585 WP_020451571.1 TetR family transcriptional regulator -
  D5285_RS10340 (D5285_10340) - 2015389..2015721 (+) 333 WP_020451572.1 multidrug efflux SMR transporter -
  D5285_RS10345 (D5285_10345) - 2015724..2016041 (+) 318 WP_020451573.1 multidrug efflux SMR transporter -
  D5285_RS10350 (D5285_10350) speG 2016070..2016612 (+) 543 WP_020451574.1 spermidine N1-acetyltransferase -
  D5285_RS10355 (D5285_10355) - 2016649..2016975 (-) 327 WP_217626321.1 YxeA family protein -
  D5285_RS10360 (D5285_10360) - 2017185..2017625 (+) 441 WP_020451576.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18322.18 Da        Isoelectric Point: 10.0056

>NTDB_id=323563 D5285_RS10325 WP_020451568.1 2012422..2012898(+) (rok) [Bacillus paralicheniformis strain CBMAI 1303]
MFDEREALRLRLEQLGDAEIQVMRELRKERQDIYSKLRELDRESDPAINKKSSLIDLASAAAEELKQSQIAADKHPPIKT
PSHTIFQSKTTIQREAALNILSRYEEGLKGIKLKTEIEKETGFPIKNMTTFMKSLMKHRPDIKKPARGHYILHKEKDL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=323563 D5285_RS10325 WP_020451568.1 2012422..2012898(+) (rok) [Bacillus paralicheniformis strain CBMAI 1303]
ATGTTCGACGAAAGAGAAGCGTTGCGTTTGAGACTTGAACAGCTAGGTGATGCGGAGATTCAGGTGATGCGGGAATTGCG
AAAAGAACGACAGGACATTTATTCGAAGCTGCGTGAATTGGACCGGGAGAGTGATCCCGCAATTAATAAAAAATCTTCAT
TGATCGACTTGGCAAGCGCTGCAGCAGAGGAATTAAAACAATCCCAAATTGCCGCTGACAAACATCCGCCCATCAAGACT
CCATCTCATACTATTTTCCAATCAAAAACAACCATACAGCGCGAGGCTGCCTTAAACATTTTAAGCCGCTATGAAGAGGG
CTTGAAAGGCATTAAGCTCAAAACTGAAATCGAGAAAGAAACCGGCTTTCCGATTAAAAACATGACGACATTTATGAAGA
GCTTAATGAAACATCGCCCAGATATTAAAAAGCCTGCCCGCGGCCATTATATTTTGCATAAAGAAAAAGACCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N2GNG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

43.407

100

0.5

Multiple sequence alignment