Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FHI56_RS04880 Genome accession   NZ_CP040804
Coordinates   750592..752379 (+) Length   595 a.a.
NCBI ID   WP_149561222.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LAB813     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 745592..757379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS04855 (FHI56_04855) rplL 745935..746303 (+) 369 WP_037613517.1 50S ribosomal protein L7/L12 -
  FHI56_RS04860 (FHI56_04860) - 746440..747689 (-) 1250 Protein_720 ISL3 family transposase -
  FHI56_RS04865 (FHI56_04865) - 748016..748273 (+) 258 WP_045769006.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  FHI56_RS04870 (FHI56_04870) - 748270..748641 (+) 372 WP_045769005.1 type II toxin-antitoxin system death-on-curing family toxin -
  FHI56_RS04875 (FHI56_04875) rcrP 748843..750579 (+) 1737 WP_002885969.1 ABC transporter ATP-binding protein Regulator
  FHI56_RS04880 (FHI56_04880) rcrQ 750592..752379 (+) 1788 WP_149561222.1 ABC transporter ATP-binding protein Regulator
  FHI56_RS04885 (FHI56_04885) queA 752477..753520 (-) 1044 WP_045769002.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  FHI56_RS04890 (FHI56_04890) - 753672..754373 (+) 702 WP_045769001.1 glucosamine-6-phosphate deaminase -
  FHI56_RS04895 (FHI56_04895) - 754563..755546 (+) 984 WP_002889116.1 rhodanese-related sulfurtransferase -
  FHI56_RS04900 (FHI56_04900) - 755725..755922 (+) 198 WP_014621323.1 helix-turn-helix transcriptional regulator -
  FHI56_RS04905 (FHI56_04905) - 755936..756430 (+) 495 WP_045769000.1 DUF6773 family protein -
  FHI56_RS04910 (FHI56_04910) - 756509..757279 (+) 771 WP_045768999.1 nucleoside phosphorylase -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 66423.45 Da        Isoelectric Point: 5.1404

>NTDB_id=323563 FHI56_RS04880 WP_149561222.1 750592..752379(+) (rcrQ) [Streptococcus salivarius strain LAB813]
MKNNKKKTNNSSSFGRLWSYLQAYRFPLYLAIFLKIVSVIMSVLEPVVIGLAITELTKNTLAIIKGVEGAHINVSYVGLV
LVVYLLRGLIYELAAYYSNYFMTNAVQATVQDMRNEMTEKINRTSVSYFDKHQFGDLLGRFTSDVETVSNALQQSFLQVV
NAVFTLALVIGTVLYLNLQLGAIVVITIPITFFGARYIMSKSQPYFKQQADALGTLNGFVQENLTGFNVLKLFGREDRSL
DDFKEITEDLQKVGFKANFISGLMMPVLNGLSDLTYLIVAVLGGLQVLAGRLTIGNMQAFVQYVWQINQPIQNLTQLAGQ
LQSAKSSLDRIFQLMDEPDEANDATEVLDGDLTGQVSFKHVDFQYVADKPLIRDFNLEVNPGEMVAIVGPTGAGKSTIIN
LLMRFYDVTAGSISVDGHDIRNLSRQDYRKQFGMVLQDAWLFEGTIKENLRFGNLDATDEEIVEAAKAANVDHFIRTLPG
GYNMEMNQESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKTLMQGRTSFVIAHRLSTIQEADKI
LVLKDGQIIEQGNHESLLADKGFYYDLYNSQFAEK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=323563 FHI56_RS04880 WP_149561222.1 750592..752379(+) (rcrQ) [Streptococcus salivarius strain LAB813]
ATGAAGAATAATAAAAAGAAAACAAATAATTCCTCAAGTTTTGGCCGCCTTTGGTCCTACTTGCAGGCTTATCGTTTCCC
ACTTTACCTAGCCATTTTCCTGAAAATTGTTAGTGTCATCATGAGTGTCCTTGAACCCGTAGTCATTGGTTTAGCTATTA
CCGAGTTGACTAAAAATACGCTGGCCATCATCAAAGGTGTGGAAGGTGCTCATATCAACGTCTCCTATGTTGGTTTGGTT
CTCGTTGTTTATCTCTTGCGTGGTCTTATTTATGAGTTGGCCGCCTACTATTCCAACTATTTCATGACCAATGCTGTGCA
AGCAACGGTTCAAGATATGCGAAATGAGATGACTGAGAAAATCAATCGTACTTCAGTGTCATACTTTGATAAGCACCAGT
TTGGGGACCTCTTGGGCCGCTTTACAAGTGATGTCGAGACAGTATCTAATGCCTTGCAACAGTCATTCTTGCAGGTTGTT
AATGCCGTCTTTACTCTAGCCTTGGTTATTGGAACAGTGCTTTACCTTAACCTTCAATTGGGAGCTATAGTTGTCATCAC
TATTCCGATTACATTCTTTGGTGCCCGCTACATCATGAGTAAGTCTCAGCCCTACTTTAAACAACAGGCTGATGCCCTAG
GTACTCTTAATGGTTTTGTTCAAGAAAATCTGACTGGCTTCAATGTGCTTAAGCTATTTGGCCGTGAGGATAGATCTTTG
GATGATTTTAAAGAAATCACAGAAGACCTTCAGAAGGTAGGTTTTAAGGCTAATTTCATTTCAGGACTCATGATGCCGGT
TCTTAATGGTTTATCTGACTTGACCTATCTAATTGTCGCTGTTTTGGGTGGTTTGCAAGTCTTGGCTGGTCGCCTGACGA
TTGGTAATATGCAGGCCTTTGTTCAGTACGTTTGGCAGATTAACCAACCTATTCAGAACTTGACTCAGTTGGCTGGACAA
TTGCAAAGTGCTAAATCTTCTTTGGACCGTATTTTCCAACTGATGGATGAACCAGACGAGGCTAATGATGCTACTGAAGT
GCTTGACGGAGATTTGACTGGCCAAGTTAGCTTTAAGCATGTGGACTTCCAGTATGTGGCTGATAAACCTTTGATTCGTG
ACTTTAATCTTGAGGTTAATCCTGGTGAAATGGTGGCCATTGTCGGTCCTACCGGTGCCGGAAAATCAACGATTATCAAC
CTACTCATGCGTTTCTATGATGTGACTGCCGGGTCTATTTCGGTTGATGGTCATGATATCCGTAACCTGTCTCGTCAGGA
TTATCGTAAGCAGTTTGGTATGGTGCTTCAGGATGCTTGGCTTTTTGAAGGAACTATCAAGGAAAATCTTCGCTTTGGTA
ATCTTGATGCGACTGACGAAGAAATTGTTGAAGCTGCTAAGGCTGCCAATGTGGACCACTTTATCCGTACCCTACCTGGT
GGTTACAACATGGAAATGAACCAGGAATCAAGTAACATCTCACTAGGACAAAAGCAACTTTTGACTATTGCGCGTGCGCT
TTTGGCTGATCCTAAAATCTTGATTTTGGACGAGGCAACCTCATCGGTTGATACCCGTCTGGAACTCTTGATTCAAAAAG
CTATGAAGACTCTTATGCAAGGTCGAACAAGCTTTGTCATTGCCCACCGTCTGTCAACTATCCAAGAAGCAGACAAAATT
TTGGTTCTTAAAGATGGTCAAATCATCGAACAAGGGAACCATGAATCCCTCCTTGCAGATAAAGGCTTCTATTACGACTT
GTATAATAGCCAGTTTGCGGAGAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(29-310)

ABC transporter (ABC_tran)

(373-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.211

100

0.424

Multiple sequence alignment