Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   FHI56_RS04875 Genome accession   NZ_CP040804
Coordinates   748843..750579 (+) Length   578 a.a.
NCBI ID   WP_002885969.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LAB813     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 743843..755579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS04845 (FHI56_04845) - 743995..745014 (-) 1020 WP_171021848.1 IS30-like element IS1139 family transposase -
  FHI56_RS04850 (FHI56_04850) rplJ 745357..745860 (+) 504 WP_021152203.1 50S ribosomal protein L10 -
  FHI56_RS04855 (FHI56_04855) rplL 745935..746303 (+) 369 WP_037613517.1 50S ribosomal protein L7/L12 -
  FHI56_RS04860 (FHI56_04860) - 746440..747689 (-) 1250 Protein_720 ISL3 family transposase -
  FHI56_RS04865 (FHI56_04865) - 748016..748273 (+) 258 WP_045769006.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  FHI56_RS04870 (FHI56_04870) - 748270..748641 (+) 372 WP_045769005.1 type II toxin-antitoxin system death-on-curing family toxin -
  FHI56_RS04875 (FHI56_04875) rcrP 748843..750579 (+) 1737 WP_002885969.1 ABC transporter ATP-binding protein Regulator
  FHI56_RS04880 (FHI56_04880) rcrQ 750592..752379 (+) 1788 WP_149561222.1 ABC transporter ATP-binding protein Regulator
  FHI56_RS04885 (FHI56_04885) queA 752477..753520 (-) 1044 WP_045769002.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  FHI56_RS04890 (FHI56_04890) - 753672..754373 (+) 702 WP_045769001.1 glucosamine-6-phosphate deaminase -
  FHI56_RS04895 (FHI56_04895) - 754563..755546 (+) 984 WP_002889116.1 rhodanese-related sulfurtransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64863.79 Da        Isoelectric Point: 5.5902

>NTDB_id=323562 FHI56_RS04875 WP_002885969.1 748843..750579(+) (rcrP) [Streptococcus salivarius strain LAB813]
MAYIWSYLRRYPKWLAMNFTAAILFVIANLGLPTVLARMIDEGINRGDADKLYTYAWVMFGVVLTGIVGRVLLSYAVSKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFAEQILKMGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPFLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSNKLFKLTGLTE
PLFVQIIIAMIVAIVWFALEPLGSGTLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETETKGYLEFDNVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIDSKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=323562 FHI56_RS04875 WP_002885969.1 748843..750579(+) (rcrP) [Streptococcus salivarius strain LAB813]
ATGGCTTATATTTGGTCTTATCTCAGGCGTTATCCTAAGTGGCTAGCAATGAATTTTACGGCGGCTATTTTATTTGTTAT
TGCTAACTTAGGTCTGCCGACGGTTCTTGCCAGAATGATTGATGAGGGGATTAACCGTGGAGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTCGGTGTGGTCTTGACTGGGATTGTTGGACGTGTGCTCTTGTCCTATGCGGTTAGTAAGTTG
ACGACCACAATGGTGCAGGTCATGCGTAATGACATTTACGCTAAGCTTCAGGAGTATTCCCACCATGAGTACGAGCAGAT
TGGCGTATCCTCTTTGGTAACTCGTATTACATCTGATGCTTTTGTTCTCATGCAATTTGCGGAACAGATTCTAAAGATGG
GTGTCATTACTCCTCTGATGATGGTTTCCAGTGTCTTCTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATTTCCTTGCCTTTCCTAGCCGTAGTAGTATGGTATGTGGCGGTAAAAACGCGTCCGCTTTCTGAGAAACAACAGGCAAC
TCTCGACAAGATTAACCAGTACGCTCGTGAAAATCTAACTGGACTTCGTGTCATCCGAGCTTTCGCTAGAGAAGATTTTC
AAGAGAAGAAGTTTGCTTCTGAAAATGCTGTCTATGCGGATAATTCAAACAAGCTCTTTAAATTAACTGGTTTGACTGAG
CCACTTTTTGTGCAAATCATCATCGCCATGATTGTGGCTATTGTTTGGTTTGCCCTCGAGCCACTAGGTTCTGGGACGTT
GGCAATCGGGGATTTGGTTGCCTTTATTGAGTACAGTTTCCATGCACTATTGTCTTTCCTTTTCCTAGCCAACCTCTTTA
CCATGTATCCTCGTACGGCGGTATCTAGTGAACGTCTGCAGGAGATTATGGATATGCCTATTTCTATTAATCCAAATGAA
GACGGGGTGACAGAGACTGAGACTAAAGGATATTTGGAGTTTGACAATGTGACCTTTGCCTATCCTGGTGAAACTGAGAG
TCCTGTCCTACACAATATTTCTTTCAAGGCTAAACCAGGTGAAACCATTGCCTTTATCGGATCTACGGGTTCAGGAAAAT
CATCACTTGTGCAGTTGATTCCACGCTTTTATGATGTAACACTTGGACGCATTCTTGTTGATGGTGTGGATGTCCGTGAC
TATAATCTGAAGGCTCTGCGTCGTAAGATTGGCTTTATTCCACAAAAAGCCCTGCTCTTTACAGGAACCATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCCAGTCATGAAGAATTGAATCAAGCTACGGATGTCGCTCAAGCTAAGGAATTTATTG
ACAGTAAGGAAGAACGCTACGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCTGTGGTTAAACGTCCCGACCTTTACATCTTTGACGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
AACCTTGCGTCGTCGTCTGAAAGAAGTGACCCAGGATGCGACAGTCTTGATTGTGGCTCAACGTGTGGGGACTATCATGG
ATGCAGACCAGATTATCGTTCTTGATAAGGGTGAAATCGTTGGTCGTGGCCGTCACGAAGAGCTTATGGAAAGCAATGAG
ATTTACCGTGAAATTGCTAATTCTCAATTGAATCAAAAGAGTCTTACAGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.15

92.215

0.37

Multiple sequence alignment