Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   D5285_RS08490 Genome accession   NZ_CP033389
Coordinates   1655201..1655488 (+) Length   95 a.a.
NCBI ID   WP_020451235.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CBMAI 1303     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1650201..1660488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5285_RS08470 (D5285_08470) - 1651862..1652236 (+) 375 WP_020451232.1 DUF4440 domain-containing protein -
  D5285_RS08475 (D5285_08475) - 1652361..1653593 (-) 1233 WP_020451233.1 aminopeptidase -
  D5285_RS08480 (D5285_08480) - 1653683..1653814 (-) 132 WP_003181378.1 protein YkpC -
  D5285_RS08485 (D5285_08485) mreBH 1653888..1654895 (-) 1008 WP_020451234.1 rod-share determining protein MreBH -
  D5285_RS08490 (D5285_08490) abrB 1655201..1655488 (+) 288 WP_020451235.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  D5285_RS08495 (D5285_08495) - 1655656..1656993 (+) 1338 WP_020451236.1 ATP-binding protein -
  D5285_RS08500 (D5285_08500) - 1657057..1657719 (+) 663 WP_020451237.1 TrkA family potassium uptake protein -
  D5285_RS08505 (D5285_08505) ade 1657847..1659568 (+) 1722 WP_020451238.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10626.48 Da        Isoelectric Point: 5.8979

>NTDB_id=323558 D5285_RS08490 WP_020451235.1 1655201..1655488(+) (abrB) [Bacillus paralicheniformis strain CBMAI 1303]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNEVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=323558 D5285_RS08490 WP_020451235.1 1655201..1655488(+) (abrB) [Bacillus paralicheniformis strain CBMAI 1303]
TTGAAAGCAATTGGAGTTGTGAGAAAAGTAGACGAACTCGGCCGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATTTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATTGTCCTGAAAAAATATAAACCGCACGGTGTGT
GCCTAATGACCGGTGAAATCACTTCTGAAAACCGCGAGTACGGAAACGGGAAAATTACGCTGAGTCCTGAGGGGGCCGAA
TTGCTTTTGGAAGAAATAAAAGCTGCCTTAAACGAAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537

Multiple sequence alignment