Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   FHI56_RS03535 Genome accession   NZ_CP040804
Coordinates   469753..471783 (+) Length   676 a.a.
NCBI ID   WP_257881484.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LAB813     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 464753..476783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS03515 (FHI56_03515) - 466000..467031 (+) 1032 WP_045769169.1 3-deoxy-7-phosphoheptulonate synthase -
  FHI56_RS03520 (FHI56_03520) - 467116..468144 (+) 1029 WP_045769170.1 3-deoxy-7-phosphoheptulonate synthase -
  FHI56_RS03525 (FHI56_03525) acpS 468150..468503 (+) 354 WP_014632616.1 holo-ACP synthase -
  FHI56_RS03530 (FHI56_03530) alr 468531..469634 (+) 1104 WP_149561179.1 alanine racemase -
  FHI56_RS03535 (FHI56_03535) recG/mmsA 469753..471783 (+) 2031 WP_257881484.1 ATP-dependent DNA helicase RecG Machinery gene
  FHI56_RS03540 (FHI56_03540) - 471795..472301 (+) 507 WP_004183442.1 hypothetical protein -
  FHI56_RS03545 (FHI56_03545) - 472913..473350 (+) 438 WP_045769172.1 hypothetical protein -
  FHI56_RS03550 (FHI56_03550) - 473542..474150 (+) 609 WP_049553918.1 DUF2975 domain-containing protein -
  FHI56_RS03555 (FHI56_03555) - 474160..474372 (+) 213 WP_002884695.1 helix-turn-helix transcriptional regulator -
  FHI56_RS11620 - 474422..474565 (-) 144 WP_175060895.1 hypothetical protein -
  FHI56_RS03560 (FHI56_03560) - 474569..475537 (-) 969 WP_049553917.1 asparaginase -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 75770.10 Da        Isoelectric Point: 5.9442

>NTDB_id=323548 FHI56_RS03535 WP_257881484.1 469753..471783(+) (recG/mmsA) [Streptococcus salivarius strain LAB813]
MIEDMIRLDSPIADLKGFGPKSAEKFTKLDLHTVGDLLLYFPFRYEDFKSKSIFELMDGEKAVITGTVVTPANVQYYGFK
RNRLSFKIKQGEAVIAISFFNQPYLVDKIEMGAEVAIFGKWDQKKSAVTGMKVLAQVEDDMQPVYHVAQGVSQAQLIKAI
RAAFDSGALNLLEESLPQVLMDKYRLMGRQEAVRAMHSPRDLAEYKQALRRTKFEELFYFQMNLQVLKAENKSETNGLAI
AYDEAKIKAKIAELPFPLTEAQQRSLSEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYGAYTAGLQSALMVPTEILAE
QHYQSLQGLFPELEVVLLTSGMKAADKKVALSKIESGEAQMIVGTHSLIQDAVTYHRLGLVITDEQHRFGVNQRRIFREK
GDNPDVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLTWIKGELEKDAQVYFISPLIEESEA
LDLKNAVALHQELTDFFGDSARVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQ
LHQLRGRVGRGHKQSYCVLVANPKNDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNIL
EEARRVASQIVSDPNWRENADWQVLGAHLRSQGEFD

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=323548 FHI56_RS03535 WP_257881484.1 469753..471783(+) (recG/mmsA) [Streptococcus salivarius strain LAB813]
ATGATAGAGGATATGATTCGACTAGATTCACCAATTGCGGATTTGAAAGGCTTTGGTCCTAAGTCCGCTGAAAAATTTAC
CAAATTAGATTTACACACGGTTGGGGACCTCTTGCTTTATTTTCCTTTCCGATATGAAGATTTTAAGAGTAAGTCTATCT
TTGAACTGATGGATGGCGAAAAGGCTGTTATTACGGGAACGGTGGTGACCCCTGCCAATGTACAGTATTATGGCTTTAAA
CGTAATCGTCTGAGTTTTAAAATCAAGCAAGGAGAGGCAGTGATTGCCATTAGTTTCTTCAACCAGCCTTATCTTGTGGA
CAAGATTGAGATGGGGGCAGAAGTGGCTATTTTTGGCAAATGGGACCAGAAGAAGTCTGCAGTGACTGGTATGAAAGTGT
TGGCTCAAGTTGAGGACGATATGCAGCCAGTCTATCATGTGGCCCAGGGCGTTAGTCAGGCCCAGCTGATAAAGGCTATA
AGGGCAGCTTTTGATAGTGGGGCCTTGAATTTGTTGGAGGAGAGTCTCCCACAGGTGCTTATGGACAAGTATCGTCTCAT
GGGACGTCAAGAGGCTGTGCGTGCCATGCATTCTCCGAGAGATTTGGCTGAATATAAGCAGGCTCTGCGTAGGACCAAGT
TTGAAGAGCTCTTTTATTTCCAGATGAACTTACAGGTACTGAAGGCTGAGAATAAGTCCGAAACCAATGGTCTAGCAATT
GCTTACGATGAGGCCAAAATCAAAGCCAAAATTGCAGAATTACCATTCCCCTTGACAGAGGCTCAACAGCGCAGTTTATC
GGAAATCCTAGCCGATATGAAATCTGGGGCTCATATGAACCGTCTTTTGCAAGGAGATGTGGGTTCAGGGAAAACAGTTA
TCGCTAGCCTGGCTATGTATGGGGCCTATACTGCAGGATTGCAGTCTGCCCTTATGGTACCGACGGAAATCTTAGCAGAG
CAACACTATCAGAGTTTGCAGGGGCTTTTTCCTGAGCTAGAGGTAGTGCTCCTAACTTCTGGGATGAAGGCGGCGGACAA
AAAAGTAGCTCTTTCCAAAATCGAATCTGGGGAGGCTCAGATGATTGTGGGGACTCACTCACTGATTCAGGATGCTGTGA
CTTATCACAGGCTTGGGCTAGTAATTACTGATGAGCAGCACCGTTTTGGGGTTAATCAACGTCGTATTTTCCGTGAGAAA
GGTGACAATCCTGATGTCCTCATGATGACAGCGACACCTATCCCTAGGACCTTGGCGATCACTGCCTTTGGAGAGATGGA
TGTGTCAATCATTGACCAGATGCCAGCTGGGCGTAAGCCCATTATTACCCGTTGGGTTAAACATGAGCAACTAGATACCG
TACTGACTTGGATCAAGGGCGAGTTGGAAAAAGATGCTCAGGTCTATTTTATTTCACCTTTGATTGAAGAGTCTGAGGCT
CTCGATTTGAAAAATGCGGTGGCCCTTCATCAGGAACTCACAGATTTCTTTGGGGATTCAGCTAGAGTGGCCCTGATGCA
CGGTCGCATGAAAAATGATGAAAAAGACCAAATTATGCAGGACTTCAAGGATAAAAAATCTCAGATTTTAGTATCAACTA
CAGTTATCGAAGTGGGGGTTAACGTGCCAAATGCTACGGTTATGGTCATTATGGATGCCGACCGCTTTGGACTTAGCCAG
CTTCACCAACTTCGAGGACGTGTAGGTCGTGGCCATAAGCAGTCCTACTGTGTTTTGGTGGCTAATCCTAAAAATGATAC
CGGGAAAAAACGCATGCAGGCCATGTGTGAGACTACGGATGGTTTTGTTCTAGCAGAAGAGGACCTTAAAATGCGTGGTT
CAGGAGAGATCTTTGGAACACGTCAGTCAGGAATTCCTGAATTTCAAGTGGCTGATATTGTGGAAGACTATAATATCTTA
GAGGAAGCAAGGCGCGTGGCCAGCCAAATTGTATCTGACCCTAACTGGCGTGAGAATGCTGATTGGCAGGTGCTTGGAGC
TCATTTGAGAAGCCAAGGCGAGTTTGATTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-162)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(598-670)

Helicase conserved C-terminal domain (Helicase_C)

(463-571)

DEAD/DEAH box helicase (DEAD)

(259-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

70.939

99.26

0.704
  recG/mmsA Streptococcus pneumoniae R36A

70.939

99.26

0.704
  recG Bacillus subtilis subsp. subtilis str. 168

49.183

99.556

0.49
  recG Neisseria meningitidis strain C311

39.724

96.45

0.383

Multiple sequence alignment