Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   D5285_RS04940 Genome accession   NZ_CP033389
Coordinates   981610..982401 (+) Length   263 a.a.
NCBI ID   WP_020450621.1    Uniprot ID   A0AAW6KG74
Organism   Bacillus paralicheniformis strain CBMAI 1303     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 976610..987401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5285_RS04910 (D5285_04910) - 977790..978686 (+) 897 WP_020450616.1 PhzF family phenazine biosynthesis isomerase -
  D5285_RS04915 (D5285_04915) - 978789..979367 (+) 579 WP_020450617.1 nitroreductase -
  D5285_RS04920 (D5285_04920) - 979401..979595 (-) 195 WP_020450618.1 YfhD family protein -
  D5285_RS04925 (D5285_04925) - 979664..979777 (-) 114 WP_023856002.1 YfhE family protein -
  D5285_RS04930 (D5285_04930) - 979845..980375 (-) 531 WP_020450619.1 GNAT family N-acetyltransferase -
  D5285_RS04935 (D5285_04935) - 980642..981541 (-) 900 WP_041817166.1 TIGR01777 family oxidoreductase -
  D5285_RS04940 (D5285_04940) recX 981610..982401 (+) 792 WP_020450621.1 recombination regulator RecX Regulator
  D5285_RS04945 (D5285_04945) - 982406..982720 (+) 315 WP_003179919.1 YfhH family protein -
  D5285_RS04950 (D5285_04950) - 982750..982920 (-) 171 WP_003179922.1 YpzG family protein -
  D5285_RS04955 (D5285_04955) - 982947..983096 (-) 150 WP_003179924.1 small, acid-soluble spore protein K -
  D5285_RS04960 (D5285_04960) - 983227..983496 (+) 270 WP_020450622.1 YfhJ family protein -
  D5285_RS04965 (D5285_04965) - 984239..985198 (+) 960 WP_020450623.1 glycosyltransferase family 2 protein -
  D5285_RS04970 (D5285_04970) - 985167..985568 (+) 402 WP_020450624.1 GtrA family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30364.60 Da        Isoelectric Point: 6.7703

>NTDB_id=323539 D5285_RS04940 WP_020450621.1 981610..982401(+) (recX) [Bacillus paralicheniformis strain CBMAI 1303]
MPYITKISAQKNNEERVNIFLDEKYAFSVDLDVLVKFDLRKGKELDELDIIEIQYGDDVKKGFKKALDYLSYRMRSTKEV
KDHLKKKDVADSAITEILHMLKGYKYLDDREFAAAYVSTHRKTSGKGPDVLFRELKLKGIDDELIQEALSSFSFSDQVEA
AVKHAEKVLKKEKKLSSKETKQAIEQHLVRKGFSFDVISAALQETDYENDDSAEREALEKQGEKAMKRCGYDGSYETKMK
VKQHLFRKGFSIDMIDQFLDEKG

Nucleotide


Download         Length: 792 bp        

>NTDB_id=323539 D5285_RS04940 WP_020450621.1 981610..982401(+) (recX) [Bacillus paralicheniformis strain CBMAI 1303]
ATGCCATATATTACAAAGATTTCTGCCCAGAAAAACAATGAAGAGCGGGTCAATATTTTTCTGGATGAAAAGTATGCGTT
CAGCGTCGACCTGGACGTGCTCGTCAAGTTTGACCTGCGAAAAGGCAAAGAGCTTGATGAGCTTGATATCATTGAGATTC
AGTACGGAGACGACGTTAAAAAAGGGTTCAAAAAAGCGCTCGATTATTTGTCATACCGGATGCGCTCGACAAAGGAAGTT
AAAGACCATCTCAAGAAAAAAGACGTCGCAGACTCCGCGATCACAGAAATCCTGCATATGCTTAAAGGTTATAAATATTT
GGACGACCGCGAATTTGCGGCTGCATATGTCAGCACCCACAGAAAAACGAGCGGCAAAGGCCCCGATGTCCTATTCAGAG
AGCTTAAATTGAAAGGGATCGATGATGAACTGATTCAGGAAGCGCTCAGTTCGTTTTCGTTTTCCGATCAGGTCGAGGCC
GCGGTCAAGCATGCGGAAAAAGTGCTGAAAAAAGAAAAAAAGCTGTCCTCCAAAGAGACGAAACAGGCCATCGAACAGCA
CCTTGTCAGAAAGGGGTTCTCCTTCGATGTCATCTCGGCCGCGCTTCAGGAAACGGATTACGAAAACGACGACAGCGCTG
AAAGGGAAGCGCTTGAGAAGCAAGGGGAAAAAGCGATGAAGAGGTGCGGTTATGACGGATCATACGAAACGAAAATGAAG
GTCAAACAGCATCTGTTCAGAAAAGGCTTTTCAATCGACATGATTGATCAATTTTTAGATGAAAAGGGATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

70.498

99.24

0.7

Multiple sequence alignment