Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   FHI56_RS01695 Genome accession   NZ_CP040804
Coordinates   139313..140089 (-) Length   258 a.a.
NCBI ID   WP_014633736.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LAB813     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 134313..145089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS01680 (FHI56_01680) purC 136886..137593 (-) 708 WP_002886293.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  FHI56_RS01685 (FHI56_01685) - 137852..138097 (-) 246 WP_045002015.1 phosphopantetheine-binding protein -
  FHI56_RS01690 (FHI56_01690) plsX 138097..139101 (-) 1005 WP_045002017.1 phosphate acyltransferase PlsX -
  FHI56_RS01695 (FHI56_01695) recO 139313..140089 (-) 777 WP_014633736.1 DNA repair protein RecO Machinery gene
  FHI56_RS01700 (FHI56_01700) - 140076..141251 (-) 1176 WP_014633737.1 pyridoxal phosphate-dependent aminotransferase -
  FHI56_RS01705 (FHI56_01705) - 141344..142309 (-) 966 WP_002886286.1 ribose-phosphate diphosphokinase -
  FHI56_RS01710 (FHI56_01710) - 142521..143918 (-) 1398 WP_013989880.1 CHAP domain-containing protein -
  FHI56_RS01715 (FHI56_01715) mreD 144003..144527 (-) 525 WP_014633740.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 29836.94 Da        Isoelectric Point: 4.9590

>NTDB_id=323523 FHI56_RS01695 WP_014633736.1 139313..140089(-) (recO) [Streptococcus salivarius strain LAB813]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGSGKLSAVIQPLTIAEFIMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDVAIADGVADAQLFAFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECIFCHRVGL
PFDFSYKFSGLLCSNHYAEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRHFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNNKEDSAD

Nucleotide


Download         Length: 777 bp        

>NTDB_id=323523 FHI56_RS01695 WP_014633736.1 139313..140089(-) (recO) [Streptococcus salivarius strain LAB813]
ATGCAGAAGCTTGAGAGTAGAGGACTTGTCCTCTTCAATCGTAATTATCGTGAGAACGATAAGCTGGTTAAGATTTTTAC
CGAGCAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTAAGTGCTGTGATTCAACCTTTAACCA
TCGCTGAATTCATAATGACTGTAAATGATGAGGGCTTATCTTTCATAGAGGATTATAGCCAGGCAGAGTCCTTCAAGGAA
ATTACAAGCGATATTTTCAAGCTGTCTTATGCGACTTATTTAGCTGCTCTGACGGATGTTGCTATTGCTGACGGTGTGGC
AGATGCGCAATTATTTGCATTCTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATCTTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGTGTACGATTGAATTTTCACGAGTGTATCTTTTGCCATCGTGTAGGCCTT
CCTTTTGACTTTTCGTATAAGTTCTCGGGGTTACTTTGTTCAAATCACTATGCAGAGGATGAAAGGCGTAGTCACTTAGA
TCCTAATGTACCTTATCTTTTAGATCGTTTTCAGGGGCTTTCTTTCGAGGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGCTACGACATTTTATTGATGACCTCTATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAGTTTATT
GATAATCTAAATTCTTGGGGACATATTATGAATAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.024

98.45

0.601