Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FDP16_RS08335 Genome accession   NZ_CP040798
Coordinates   1677239..1678897 (-) Length   552 a.a.
NCBI ID   WP_176799296.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1672239..1683897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS08300 (FDP16_08650) - 1672857..1673132 (-) 276 WP_002896125.1 HU family DNA-binding protein -
  FDP16_RS08305 (FDP16_08655) - 1673245..1674078 (-) 834 WP_176799292.1 DegV family protein -
  FDP16_RS08310 (FDP16_08660) - 1674454..1674639 (+) 186 Protein_1625 IS5/IS1182 family transposase -
  FDP16_RS11930 - 1674666..1675176 (+) 511 Protein_1626 IS3 family transposase -
  FDP16_RS08320 (FDP16_08665) - 1675240..1675731 (-) 492 WP_218134316.1 DUF308 domain-containing protein -
  FDP16_RS08325 - 1676007..1676384 (+) 378 WP_176799294.1 transposase -
  FDP16_RS08330 (FDP16_08675) - 1676455..1677186 (-) 732 WP_176799295.1 metallophosphoesterase -
  FDP16_RS08335 (FDP16_08680) recN 1677239..1678897 (-) 1659 WP_176799296.1 DNA repair protein RecN Machinery gene
  FDP16_RS08340 (FDP16_08685) - 1678906..1679336 (-) 431 Protein_1631 arginine repressor -
  FDP16_RS08345 (FDP16_08690) - 1679329..1680144 (-) 816 WP_176799297.1 TlyA family RNA methyltransferase -
  FDP16_RS08350 (FDP16_08695) - 1680137..1681012 (-) 876 WP_176799298.1 polyprenyl synthetase family protein -
  FDP16_RS08355 (FDP16_08700) - 1681009..1681221 (-) 213 WP_002896137.1 exodeoxyribonuclease VII small subunit -
  FDP16_RS08360 (FDP16_08705) xseA 1681199..1682537 (-) 1339 Protein_1635 exodeoxyribonuclease VII large subunit -
  FDP16_RS12075 (FDP16_08710) - 1682503..1682717 (-) 215 Protein_1636 initiator RepB protein -
  FDP16_RS08365 (FDP16_08715) - 1682693..1683535 (-) 843 WP_176799299.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62299.53 Da        Isoelectric Point: 4.6199

>NTDB_id=323327 FDP16_RS08335 WP_176799296.1 1677239..1678897(-) (recN) [Streptococcus sanguinis strain CGMH058]
MLLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSRATTDVIRHGAPKAEIEGLFSLENSRALREIF
EEQGWELTDELIIRREILQNGRSVSRINGQMVNLSVLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGSADFLHLKGR
YQETFDRYRSLRKQVLTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERNRLLNHKLIADTLTNAYTMLDNED
FSSLTNVRSAMNDLESIEDYDPAYKELSGSLSETYYVLEDVSKRLEDILDGLDFDGDRLLQVESRLDLINSITRKYGGQV
DDVLDYFAQISKEYSLLTGSNLSSEDMDRELKVLERELVELAQELSQARHGLAAQLEAEIKQELQDLYMEKARFKVQFSK
GKFNREGNEQVEFYISANPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
SNGQVLAISHLPQVIAIADYQFFIEKISDENSTVSTVRLLTADERVQEVAKMLAGEDVTEAALTQARELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=323327 FDP16_RS08335 WP_176799296.1 1677239..1678897(-) (recN) [Streptococcus sanguinis strain CGMH058]
ATGTTATTAGAAATTTCGATTAAAAATTTTGCCATTATTGAGGAGATATCCCTTAATTTTGAGCAAGGTATGACGGTTTT
GACCGGGGAAACCGGAGCCGGCAAGTCTATTATTATTGACGCGATGAACATGATGCTGGGCAGCCGTGCTACGACGGATG
TTATTCGTCATGGGGCACCTAAAGCTGAGATAGAAGGACTTTTTTCGCTGGAAAATAGCAGAGCTTTGCGAGAGATTTTT
GAGGAGCAGGGCTGGGAGCTGACCGATGAGCTGATTATCCGTCGGGAAATTCTGCAAAACGGCCGCAGTGTCAGCCGTAT
CAATGGCCAGATGGTTAATCTGTCTGTTCTAAAGGCTGTCGGTCAACATTTGGTGGATATACATGGTCAGCATGATCAGG
AAGAACTGATGAGACCCCAGCTTCATATCGCCATGCTAGATGAGTTTGGCTCAGCAGACTTTTTGCATCTCAAAGGCCGC
TATCAGGAAACCTTTGACCGCTATCGAAGCCTGCGTAAGCAAGTCCTGACTTTACAGAAAAATCAGCAGGAGCATAAGGC
CAGGATTGAGATGCTGGAGTTTCAGATGGCGGAGATTGAAAGTGCCGCCCTTAAAAGCGGTGAAGATACTGCCCTGCATC
AGGAGCGGAACCGCTTGCTTAACCACAAGCTCATTGCCGATACGCTGACCAACGCCTATACCATGCTGGATAATGAAGAT
TTTTCCAGTCTGACCAATGTCCGCTCAGCTATGAATGACCTTGAGTCTATCGAGGATTACGATCCAGCTTACAAGGAGCT
TTCCGGCAGTTTGTCAGAGACTTATTATGTCTTGGAAGATGTCAGCAAGCGCCTAGAGGATATTTTAGATGGACTGGATT
TTGACGGAGATCGGCTGTTGCAGGTGGAGAGTCGTCTGGATTTGATTAACAGCATCACGCGTAAATACGGCGGCCAAGTA
GATGATGTGCTGGATTACTTTGCTCAGATTTCCAAAGAATACAGCCTTTTAACTGGAAGCAACTTATCCTCAGAGGATAT
GGACCGAGAGCTGAAGGTCTTGGAGAGAGAGCTGGTAGAGCTGGCGCAGGAGCTGAGTCAGGCTCGTCACGGCCTAGCAG
CCCAGCTGGAAGCGGAAATCAAGCAAGAACTGCAAGACCTCTACATGGAAAAGGCGCGCTTTAAAGTGCAGTTCAGTAAG
GGCAAGTTCAACCGTGAAGGCAATGAACAAGTAGAGTTTTACATCTCAGCCAATCCGGGCGAGGATTTCAAACCTTTGGT
GAAGGTTGCGTCTGGCGGGGAGCTATCCCGTCTCATGTTGGCTATCAAGTCTGCCTTTTCTCGTAAGGAAGGCAAGACCA
GCATTGTCTTTGACGAAGTGGATACGGGCGTTTCTGGCCGAGTGGCCCAGGCTATTGCTCAGAAGATTTACAAGATTGGC
TCCAATGGCCAAGTCTTGGCCATTTCCCATCTGCCGCAGGTCATTGCGATTGCCGATTATCAGTTCTTTATTGAGAAAAT
TTCGGATGAGAATTCGACCGTCTCAACGGTTCGGCTTCTGACGGCTGACGAGCGTGTTCAGGAAGTCGCTAAGATGCTGG
CTGGCGAAGATGTGACGGAGGCTGCTTTGACTCAGGCCAGAGAATTATTAAAAAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.761

100

0.451