Detailed information NTG0323316

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FDP16_RS07540
• Genome accession: NZ_CP040798
• Coordinates: 1515966..1517078 (-)
• Length: 370 a.a.
• NCBI ID: WP_176799181.1
• Uniprot ID: -
• Organism: Streptococcus sanguinis strain CGMH058
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1510966..1522078

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDP16_RS07525 (FDP16_07835)	-	1514059..1514901 (-)	843	WP_176799180.1	DUF695 domain-containing protein	-
FDP16_RS07535 (FDP16_07845)	-	1515509..1515847 (-)	339	WP_002897870.1	metal-sulfur cluster assembly factor	-
FDP16_RS07540 (FDP16_07850)	rpoS	1515966..1517078 (-)	1113	WP_176799181.1	RNA polymerase sigma factor RpoD	Regulator
FDP16_RS07545 (FDP16_07855)	dnaG	1517081..1518865 (-)	1785	WP_305727988.1	DNA primase	-
FDP16_RS07550 (FDP16_07860)	mscL	1519020..1519403 (+)	384	WP_176799183.1	large conductance mechanosensitive channel protein MscL	-
FDP16_RS07555 (FDP16_07865)	rpsU	1519714..1519890 (-)	177	WP_000048054.1	30S ribosomal protein S21	-
FDP16_RS07560 (FDP16_07870)	-	1520039..1520722 (-)	684	WP_176799184.1	DUF4956 domain-containing protein	-
FDP16_RS07565 (FDP16_07875)	-	1520734..1521465 (-)	732	WP_176799185.1	polyphosphate polymerase domain-containing protein	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42345.96 Da
• Isoelectric Point: 4.4233

>NTDB_id=323316 FDP16_RS07540 WP_176799181.1 1515966..1517078(-) (rpoS) [Streptococcus sanguinis strain CGMH058]
MATKQKEVTTLDVQIAEFIRNHKQTGVATDDEINDQLVIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLNNEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLSNEEEQELAILIEQGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED

Nucleotide

• Length: 1113 bp

>NTDB_id=323316 FDP16_RS07540 WP_176799181.1 1515966..1517078(-) (rpoS) [Streptococcus sanguinis strain CGMH058]
ATGGCTACAAAACAAAAAGAAGTAACAACATTAGACGTTCAAATTGCAGAATTTATCCGCAACCACAAGCAGACAGGTGT
TGCGACAGATGATGAGATCAATGACCAACTGGTCATTCCCTTCACTTTGGACGCTGATGGGATTGAGGATTTGCTGCAGC
GCATTCAGGATGCTGGTATCTCAATTACAGATAAGGAAGGAAATCCCAGCGCTCGTGTCTTAAATAACGAAGAGGAAGAA
GCAGAGCTGACAGATGAGGAGCTTTTAGGCAGCAATTCAGCTAAGGTTAATGACCCAGTCCGCATGTATCTGAAAGAAAT
CGGGGTTGTGCCGCTTCTCAGCAATGAAGAAGAGCAGGAGCTGGCTATTTTGATAGAGCAAGGAGACTTGGAAGCCAAGC
AGCGTCTGGCTGAGGCCAATCTTCGTCTGGTTGTTTCCATTGCCAAGCGCTATGTCGGCCGTGGTATGCAATTCCTTGAC
TTGATCCAAGAAGGAAATATGGGGCTGATGAAGGCCGTTGATAAGTTCGACTACACCAAAGGATTTAAGTTTTCAACTTA
TGCGACTTGGTGGATTCGTCAGGCCATTACCCGTGCGATTGCTGACCAAGCTCGGACTATTCGGATTCCGGTTCACATGG
TGGAAACCATTAACAAGCTAGTCCGTGAGCAACGCAATCTCTTGCAGGAGTTGGGCCAAGACCCAACACCAGAGCAAATC
GCTGAGCGTATGGATATGACGCCGGACAAGGTTCGTGAGATTCTCAAGATTGCCCAAGAGCCAGTTTCCTTGGAGACACC
TATCGGTGAAGAAGATGACAGTCATCTAGGAGACTTTATCGAAGATGAAGTAATTGAAAATCCAGTCGACTATACAACCC
GCGTCGTTCTACGCGAACAGTTGGATGAGGTCTTGGATACGCTGACAGATCGCGAGGAAAACGTCTTGCGTCTGCGCTTT
GGTCTAGACGATGGAAAAATGCGGACACTGGAAGATGTCGGCAAGGTCTTCAATGTCACTCGCGAGCGGATTCGCCAGAT
TGAAGCCAAAGCCCTGCGTAAACTCCGCCATCCAAGCCGCAGCAAACCACTCAGAGACTTTATCGAAGATTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (215-291)

• Sigma-70 region 2 (Sigma70_r2) (136-205)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (98-130)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (14-87)

• Sigma-70, region 4 (Sigma70_r4) (304-357)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	46.575	78.919	0.368