Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AFE_RS12640 | Genome accession | NC_011761 |
| Coordinates | 2449059..2450090 (-) | Length | 343 a.a. |
| NCBI ID | WP_009568264.1 | Uniprot ID | A0A2W1KN79 |
| Organism | Acidithiobacillus ferrooxidans ATCC 23270 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2444059..2455090
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AFE_RS12610 (AFE_2747) | hslV | 2444269..2444808 (+) | 540 | WP_009565976.1 | ATP-dependent protease subunit HslV | - |
| AFE_RS12615 (AFE_2748) | hslU | 2444811..2446133 (+) | 1323 | WP_012537366.1 | ATP-dependent protease ATPase subunit HslU | - |
| AFE_RS12620 (AFE_2749) | - | 2446156..2446488 (-) | 333 | WP_009568269.1 | hypothetical protein | - |
| AFE_RS12625 (AFE_2750) | rpoH | 2446485..2447345 (-) | 861 | WP_012537367.1 | RNA polymerase sigma factor RpoH | - |
| AFE_RS12630 (AFE_2751) | ftsX | 2447489..2448394 (-) | 906 | WP_009568267.1 | permease-like cell division protein FtsX | - |
| AFE_RS12635 (AFE_2752) | ftsE | 2448391..2449062 (-) | 672 | WP_009568266.1 | cell division ATP-binding protein FtsE | - |
| AFE_RS12640 (AFE_2753) | pilA | 2449059..2450090 (-) | 1032 | WP_009568264.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| AFE_RS12645 (AFE_2754) | rsmD | 2450213..2450782 (+) | 570 | WP_009568262.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| AFE_RS12650 (AFE_2755) | coaD | 2450775..2451299 (+) | 525 | WP_012537368.1 | pantetheine-phosphate adenylyltransferase | - |
| AFE_RS12655 (AFE_2757) | - | 2451328..2451579 (+) | 252 | WP_012537369.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| AFE_RS12660 (AFE_2756) | - | 2451563..2453542 (-) | 1980 | WP_012537370.1 | dynamin family protein | - |
| AFE_RS12665 (AFE_2758) | mutM | 2453559..2454371 (-) | 813 | WP_009567582.1 | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | - |
Sequence
Protein
Download Length: 343 a.a. Molecular weight: 36809.09 Da Isoelectric Point: 6.8862
>NTDB_id=32331 AFE_RS12640 WP_009568264.1 2449059..2450090(-) (pilA) [Acidithiobacillus ferrooxidans ATCC 23270]
MVFDWFKRNKSLPAGETFAEEVNSPATVATIPEDTPKGLFSRLRQGLARSREQLAGGVGRLVLGKKVIDADLLEELEALL
LQADLGSAATREVMDSVTERVRRNELTDPAALQAALRESLLDILRPRAQPWSPEKGHSQVLLMVGINGAGKTTTIGKLAA
RWKAEGFTVVLAAGDTFRAAAVEQLQGWGRRAQVPVVAQGTGADSASVIFDALTTTRARGSDLLIADTAGRLHTQGHLME
ELKKIRRVLGKQDPEAPQQIWLVLDAGTGQNALNQARQFHDAVGLTGICITKLDGTAKGGVVAAIAKALPIPIRYIGVGE
QVEDLRPFDPESFVDALFAESKS
MVFDWFKRNKSLPAGETFAEEVNSPATVATIPEDTPKGLFSRLRQGLARSREQLAGGVGRLVLGKKVIDADLLEELEALL
LQADLGSAATREVMDSVTERVRRNELTDPAALQAALRESLLDILRPRAQPWSPEKGHSQVLLMVGINGAGKTTTIGKLAA
RWKAEGFTVVLAAGDTFRAAAVEQLQGWGRRAQVPVVAQGTGADSASVIFDALTTTRARGSDLLIADTAGRLHTQGHLME
ELKKIRRVLGKQDPEAPQQIWLVLDAGTGQNALNQARQFHDAVGLTGICITKLDGTAKGGVVAAIAKALPIPIRYIGVGE
QVEDLRPFDPESFVDALFAESKS
Nucleotide
Download Length: 1032 bp
>NTDB_id=32331 AFE_RS12640 WP_009568264.1 2449059..2450090(-) (pilA) [Acidithiobacillus ferrooxidans ATCC 23270]
ATGGTGTTCGACTGGTTCAAGCGTAACAAAAGCCTCCCTGCGGGGGAAACGTTCGCCGAAGAGGTGAACTCCCCTGCCAC
TGTGGCGACTATCCCGGAAGATACCCCCAAGGGACTTTTCTCTCGTCTTCGGCAAGGTCTGGCCCGCAGCCGGGAACAAC
TGGCCGGGGGTGTAGGGCGTCTGGTACTTGGTAAAAAGGTTATCGATGCCGATCTGCTGGAAGAACTGGAAGCCTTGCTG
CTACAGGCGGATCTCGGCAGCGCCGCAACCCGCGAAGTCATGGACAGCGTCACGGAGCGGGTGCGTCGCAACGAACTCAC
GGACCCCGCCGCGCTCCAGGCGGCACTGCGCGAGTCGCTTCTGGATATCCTGCGTCCCCGCGCACAACCCTGGTCGCCCG
AGAAGGGGCATTCTCAGGTGTTGCTCATGGTCGGTATCAACGGCGCAGGCAAAACGACCACCATCGGTAAACTGGCGGCA
CGCTGGAAGGCGGAAGGTTTCACGGTGGTGCTTGCTGCCGGGGACACCTTCCGCGCCGCTGCCGTCGAGCAGTTGCAGGG
CTGGGGGAGGCGCGCGCAGGTGCCGGTGGTGGCTCAGGGTACGGGCGCTGACAGCGCCTCCGTGATTTTCGATGCGCTGA
CCACGACCCGCGCGCGTGGCAGCGACCTGCTCATCGCCGATACCGCCGGGCGCCTCCACACCCAAGGCCATCTCATGGAA
GAGTTGAAGAAGATCAGGCGGGTTCTCGGCAAACAGGATCCGGAGGCGCCGCAGCAGATCTGGTTGGTGCTGGACGCCGG
GACGGGGCAGAACGCCCTCAATCAGGCACGTCAGTTTCATGACGCCGTGGGGCTGACGGGTATTTGCATCACCAAGCTGG
ATGGCACCGCCAAGGGGGGCGTGGTGGCGGCCATCGCCAAGGCCCTGCCCATCCCCATTCGCTACATTGGTGTCGGTGAG
CAGGTCGAAGACTTGCGTCCCTTTGACCCCGAATCCTTTGTCGATGCCTTGTTTGCGGAGTCGAAGTCATGA
ATGGTGTTCGACTGGTTCAAGCGTAACAAAAGCCTCCCTGCGGGGGAAACGTTCGCCGAAGAGGTGAACTCCCCTGCCAC
TGTGGCGACTATCCCGGAAGATACCCCCAAGGGACTTTTCTCTCGTCTTCGGCAAGGTCTGGCCCGCAGCCGGGAACAAC
TGGCCGGGGGTGTAGGGCGTCTGGTACTTGGTAAAAAGGTTATCGATGCCGATCTGCTGGAAGAACTGGAAGCCTTGCTG
CTACAGGCGGATCTCGGCAGCGCCGCAACCCGCGAAGTCATGGACAGCGTCACGGAGCGGGTGCGTCGCAACGAACTCAC
GGACCCCGCCGCGCTCCAGGCGGCACTGCGCGAGTCGCTTCTGGATATCCTGCGTCCCCGCGCACAACCCTGGTCGCCCG
AGAAGGGGCATTCTCAGGTGTTGCTCATGGTCGGTATCAACGGCGCAGGCAAAACGACCACCATCGGTAAACTGGCGGCA
CGCTGGAAGGCGGAAGGTTTCACGGTGGTGCTTGCTGCCGGGGACACCTTCCGCGCCGCTGCCGTCGAGCAGTTGCAGGG
CTGGGGGAGGCGCGCGCAGGTGCCGGTGGTGGCTCAGGGTACGGGCGCTGACAGCGCCTCCGTGATTTTCGATGCGCTGA
CCACGACCCGCGCGCGTGGCAGCGACCTGCTCATCGCCGATACCGCCGGGCGCCTCCACACCCAAGGCCATCTCATGGAA
GAGTTGAAGAAGATCAGGCGGGTTCTCGGCAAACAGGATCCGGAGGCGCCGCAGCAGATCTGGTTGGTGCTGGACGCCGG
GACGGGGCAGAACGCCCTCAATCAGGCACGTCAGTTTCATGACGCCGTGGGGCTGACGGGTATTTGCATCACCAAGCTGG
ATGGCACCGCCAAGGGGGGCGTGGTGGCGGCCATCGCCAAGGCCCTGCCCATCCCCATTCGCTACATTGGTGTCGGTGAG
CAGGTCGAAGACTTGCGTCCCTTTGACCCCGAATCCTTTGTCGATGCCTTGTTTGCGGAGTCGAAGTCATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
52.778 |
94.461 |
0.499 |