Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FDP16_RS06180 Genome accession   NZ_CP040798
Coordinates   1204354..1206132 (-) Length   592 a.a.
NCBI ID   WP_176798984.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1199354..1211132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS06165 (FDP16_06415) - 1199487..1201574 (-) 2088 WP_176798981.1 PavB family fibronectin-binding SSURE repeat adhesin -
  FDP16_RS06170 (FDP16_06420) brnQ 1201900..1203228 (-) 1329 WP_176798982.1 branched-chain amino acid transport system II carrier protein -
  FDP16_RS06175 (FDP16_06425) - 1203743..1204297 (-) 555 WP_176798983.1 GNAT family N-acetyltransferase -
  FDP16_RS06180 (FDP16_06430) rcrQ 1204354..1206132 (-) 1779 WP_176798984.1 ABC transporter ATP-binding protein Regulator
  FDP16_RS06185 (FDP16_06435) rcrP 1206146..1207882 (-) 1737 WP_176798985.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66553.96 Da        Isoelectric Point: 5.8865

>NTDB_id=323308 FDP16_RS06180 WP_176798984.1 1204354..1206132(-) (rcrQ) [Streptococcus sanguinis strain CGMH058]
MKNTSSFARLWIYLKVYKFAVAFAIFLKILSVVMSVVEPFVLGLAITELTNNLLDMAKGVPGAQINVSYVGWVMVLYFVR
AIFYEIGSYYSNYFMTNAVQATIRDLRDELSHKINRIPVSYFDKHQFGDLLGRFTSDVEAVSNALQQSFLQLINAVFTLI
LVIVMVLVLNLQLGIIVVISIPITYLSARFIVEKSQPYFKQQADALGAMNGFVQENLTGFNILKLYVREESSQEDFHQIT
QNLQKVGFKASFISGLMNPVLNLISDLTYLLLAVLGGLQVIAGHLTVGNLQAFVQYVWQINQPIQNLTQLAGQLQSAKSS
LDRIFQVLDEADEVNDKTEKLDQDLTGQVSFKDVDFQYVVDKPLIRNFNLEVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTKGAITVDGHDIRHLSRQDYRKQFGMVLQDAWLYEGTIKENLRFGNLQATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISLGQKQLLTIARALLANPKILILDEATSSVDTRLELLIQKAMKTLMQGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYDLYQSQFSKKAEEA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=323308 FDP16_RS06180 WP_176798984.1 1204354..1206132(-) (rcrQ) [Streptococcus sanguinis strain CGMH058]
ATGAAAAACACATCTAGTTTTGCTCGCCTGTGGATCTACCTAAAAGTTTATAAGTTTGCAGTCGCCTTTGCGATCTTCCT
CAAAATCCTCAGCGTCGTTATGAGTGTCGTCGAGCCCTTTGTCTTAGGTCTAGCCATTACTGAACTGACAAATAATTTGC
TGGATATGGCTAAAGGTGTGCCTGGTGCCCAGATTAATGTTTCTTATGTTGGCTGGGTCATGGTCTTGTATTTTGTGCGG
GCGATTTTTTATGAAATCGGTTCTTACTATTCTAATTACTTTATGACCAATGCAGTACAGGCTACCATTCGTGACTTGCG
CGATGAACTTAGTCATAAGATTAATCGCATCCCCGTTTCCTACTTTGATAAGCACCAGTTTGGTGACTTGCTGGGGCGTT
TTACCAGCGATGTCGAAGCTGTTTCCAATGCCTTGCAGCAGTCCTTTCTGCAGCTTATCAACGCAGTCTTTACTCTAATC
TTGGTCATCGTCATGGTATTGGTACTCAATCTGCAGTTGGGTATAATTGTGGTAATTTCGATTCCGATTACCTACCTCAG
TGCTCGCTTTATCGTGGAGAAATCCCAGCCTTACTTTAAACAGCAGGCAGATGCACTAGGAGCTATGAATGGCTTTGTTC
AGGAGAATTTAACAGGCTTTAATATTTTGAAGCTCTATGTCAGAGAAGAAAGCTCCCAGGAGGATTTTCATCAAATTACG
CAAAACCTGCAGAAAGTAGGCTTTAAGGCCAGCTTTATCTCAGGTCTCATGAATCCAGTTTTGAACCTTATTTCTGACCT
GACTTATCTGCTGCTAGCTGTACTGGGTGGACTTCAGGTTATCGCTGGGCACTTGACAGTCGGAAATCTGCAAGCTTTTG
TTCAGTATGTCTGGCAGATTAATCAGCCCATTCAAAACCTGACTCAGTTAGCAGGTCAGCTGCAGAGTGCCAAGTCTTCT
TTAGACCGGATTTTCCAAGTGCTGGACGAAGCTGACGAAGTCAATGATAAGACAGAAAAGCTGGATCAAGATCTGACAGG
TCAGGTTAGCTTCAAGGATGTGGACTTCCAGTATGTAGTAGACAAGCCGCTTATTCGGAATTTCAATCTGGAAGTCAAAC
CAGGTGAAATGGTCGCCATTGTTGGTCCGACTGGTGCTGGTAAAACCACGCTGATTAACTTGCTCATGCGTTTCTACGAT
GTGACCAAAGGCGCGATTACAGTTGATGGGCATGATATACGCCACCTTTCCCGCCAGGACTACCGTAAACAGTTCGGTAT
GGTGCTGCAGGATGCTTGGCTTTATGAGGGGACTATCAAGGAAAATCTTCGCTTTGGCAATTTGCAAGCCACTGATGAAG
AGATCGTAGAAGCGGCCAAGGCAGCTAATGTGGATCACTTTATTCGGACCTTGCCAGGCGGCTACAATATGGAAATGAAC
CAAGAATCCAGTAATATCTCGCTGGGTCAGAAACAGTTGCTTACGATTGCGAGGGCTCTTTTGGCCAATCCTAAGATTCT
GATTTTGGATGAAGCGACCTCATCTGTCGATACACGGCTGGAGCTCTTGATTCAGAAGGCTATGAAAACACTCATGCAGG
GCAGGACTAGTTTTGTCATTGCTCACCGACTGTCGACCATTCAGGAAGCGGATAAGATTTTGGTGCTCAAGGATGGTCAG
ATTATCGAGCAAGGAAATCATGAGAGTCTCTTGGCTGATAAAGGATTTTATTATGACCTCTATCAGAGCCAATTTTCTAA
AAAAGCGGAAGAAGCTTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(22-303)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.327

100

0.424