Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   FDP16_RS02760 Genome accession   NZ_CP040798
Coordinates   540380..541156 (-) Length   258 a.a.
NCBI ID   WP_176798479.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 535380..546156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS02750 (FDP16_02855) - 539316..539633 (-) 318 WP_002899683.1 DUF960 domain-containing protein -
  FDP16_RS02755 (FDP16_02860) - 539760..540293 (-) 534 WP_176798478.1 DUF402 domain-containing protein -
  FDP16_RS02760 (FDP16_02865) recX 540380..541156 (-) 777 WP_176798479.1 recombination regulator RecX Regulator
  FDP16_RS02765 (FDP16_02870) rlmD 541323..542693 (+) 1371 WP_176798480.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  FDP16_RS02770 (FDP16_02875) - 542889..543593 (-) 705 WP_176798481.1 MIP/aquaporin family protein -
  FDP16_RS02775 (FDP16_02880) glpO 543662..545488 (-) 1827 WP_176798482.1 type 1 glycerol-3-phosphate oxidase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30320.56 Da        Isoelectric Point: 6.9960

>NTDB_id=323281 FDP16_RS02760 WP_176798479.1 540380..541156(-) (recX) [Streptococcus sanguinis strain CGMH058]
MKITKIEKKKRLYLLELDESEKLYITEDTIVRFMLSKGMEITEQELSEIQDYAQFSYGKNLALYHLSFKQRTAKEVKDYL
TQHDIQPEIISQVLDNLKKDNWIDDRKYATSFIQSNLLTGDKGSFVLKQKLSQKGISSTIIEEELSQFDFTELTDKVAEK
LLKKHQGKLPSKALQDKILQALINKGFSYGQAKEAFHHLDIEEDQENQQELLYKELDKQYRKYSKKYEGYDLKQRLTQAL
ARKGYDFSDIASALREYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=323281 FDP16_RS02760 WP_176798479.1 540380..541156(-) (recX) [Streptococcus sanguinis strain CGMH058]
ATGAAAATCACAAAAATCGAAAAGAAAAAAAGACTCTACCTCTTGGAGTTGGACGAAAGTGAAAAGCTCTATATCACAGA
AGACACCATTGTACGCTTCATGCTGTCTAAAGGGATGGAAATTACAGAGCAGGAGCTATCAGAAATTCAAGACTATGCCC
AATTCTCCTACGGAAAAAATCTAGCCCTCTACCATCTCTCCTTCAAGCAAAGAACTGCCAAGGAAGTTAAAGACTACTTA
ACCCAGCACGACATCCAACCTGAAATCATCAGTCAGGTCTTGGACAATCTAAAAAAGGATAATTGGATTGATGATAGAAA
ATATGCTACTTCTTTTATTCAATCCAACCTTCTCACTGGTGACAAAGGCTCTTTTGTTCTCAAGCAAAAACTCAGTCAAA
AAGGGATTTCTAGCACTATCATAGAGGAAGAATTGAGCCAGTTTGATTTTACTGAATTAACAGACAAGGTTGCCGAAAAG
CTGCTCAAAAAACACCAAGGAAAACTGCCCAGCAAGGCCTTGCAAGATAAAATCCTCCAAGCCCTGATAAACAAAGGATT
TTCCTATGGACAAGCCAAAGAGGCCTTCCATCATCTAGACATTGAAGAAGACCAGGAAAACCAACAAGAGCTGCTCTATA
AAGAGCTAGACAAGCAGTACCGCAAGTACTCCAAAAAGTACGAGGGCTACGACTTAAAACAGCGTCTGACCCAAGCTCTG
GCCCGCAAAGGCTATGATTTTTCGGACATTGCCAGCGCTCTAAGAGAATATCTTTAA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.955

100

0.372

Multiple sequence alignment