Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FDP16_RS02575 Genome accession   NZ_CP040798
Coordinates   511608..512090 (-) Length   160 a.a.
NCBI ID   WP_002893508.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 506608..517090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS02550 (FDP16_02650) - 507114..507641 (+) 528 WP_176798463.1 DUF1273 domain-containing protein -
  FDP16_RS02555 (FDP16_02655) gpsB 507713..508075 (+) 363 WP_305727997.1 cell division regulator GpsB -
  FDP16_RS02565 (FDP16_02670) - 508749..509903 (+) 1155 WP_176798465.1 class I SAM-dependent RNA methyltransferase -
  FDP16_RS02570 (FDP16_02675) - 509916..511373 (+) 1458 WP_176798466.1 cell division site-positioning protein MapZ family protein -
  FDP16_RS02575 (FDP16_02680) luxS 511608..512090 (-) 483 WP_002893508.1 S-ribosylhomocysteine lyase Regulator
  FDP16_RS02580 (FDP16_02685) - 512454..514067 (+) 1614 WP_125434975.1 ribonuclease Y -
  FDP16_RS02585 (FDP16_02690) gmk 514255..514887 (+) 633 WP_002893505.1 guanylate kinase -
  FDP16_RS02590 (FDP16_02695) rpoZ 514913..515227 (+) 315 WP_176798467.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17887.39 Da        Isoelectric Point: 4.8528

>NTDB_id=323276 FDP16_RS02575 WP_002893508.1 511608..512090(-) (luxS) [Streptococcus sanguinis strain CGMH058]
MSKEVIVESFELDHTIVKAPYVRLIGEETGPKGDIISNFDIRLVQPNEDSIPTAGLHTIEHLLAMLIRKRIDGMIDCSPF
GCRTGFHMIMWGQHSSSQIAQVIKSCLEEIAESTSWEDVPGTTIESCGNYKDHSLFSAKEWAKLILSQGISDDAFERHVI

Nucleotide


Download         Length: 483 bp        

>NTDB_id=323276 FDP16_RS02575 WP_002893508.1 511608..512090(-) (luxS) [Streptococcus sanguinis strain CGMH058]
ATGTCTAAAGAAGTTATCGTTGAAAGCTTTGAGCTGGATCACACCATTGTCAAAGCGCCTTACGTCCGCCTCATCGGAGA
GGAAACTGGTCCTAAAGGCGACATCATTTCCAATTTTGATATCCGTCTGGTTCAGCCAAATGAAGATTCCATTCCGACTG
CTGGCCTGCATACTATTGAGCATTTGCTGGCTATGTTGATCCGCAAGCGCATTGATGGTATGATTGACTGCTCACCTTTT
GGCTGCCGAACTGGTTTTCATATGATTATGTGGGGCCAACATAGTTCCAGCCAAATTGCTCAAGTCATCAAATCCTGTCT
AGAAGAAATCGCTGAGTCAACTAGCTGGGAAGATGTCCCTGGAACAACCATTGAATCCTGTGGAAACTACAAGGATCACA
GCCTTTTCTCAGCTAAAGAATGGGCCAAACTTATTCTCAGCCAAGGAATCTCAGATGATGCCTTTGAACGCCATGTGATT
TAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

39.333

93.75

0.369