Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   SMI_RS08915 Genome accession   NC_013853
Coordinates   1809613..1810209 (+) Length   198 a.a.
NCBI ID   WP_000248753.1    Uniprot ID   -
Organism   Streptococcus mitis B6     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1804613..1815209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS08890 (smi_1751) mapZ 1805558..1806952 (-) 1395 WP_000039110.1 cell division site-positioning protein MapZ -
  SMI_RS08895 (smi_1752) - 1806965..1808122 (-) 1158 WP_000711367.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  SMI_RS08905 (smi_1754) gpsB 1808608..1808949 (-) 342 WP_000094897.1 cell division regulator GpsB -
  SMI_RS08910 (smi_1755) - 1809019..1809546 (-) 528 WP_000205317.1 DUF1273 domain-containing protein -
  SMI_RS08915 (smi_1756) recU 1809613..1810209 (+) 597 WP_000248753.1 Holliday junction resolvase RecU Machinery gene
  SMI_RS08920 (smi_1757) pbp1a 1810206..1812386 (+) 2181 WP_001041854.1 penicillin-binding protein PBP1A -
  SMI_RS08925 (smi_1758) amiA 1812528..1814507 (-) 1980 WP_000857578.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23017.50 Da        Isoelectric Point: 10.0651

>NTDB_id=32327 SMI_RS08915 WP_000248753.1 1809613..1810209(+) (recU) [Streptococcus mitis B6]
MVNYPHKISSKKSQTSLSQPKNFANRGMSFEKMINATNDYYLSQGLAVIHKKPTPIQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYKGYYIDFEAKETKQKRAIPMKNFHPHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAFDLIRFYHQDKGQK
SMPLGYIREYGYEIKAGAFPQIPYLNVIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=32327 SMI_RS08915 WP_000248753.1 1809613..1810209(+) (recU) [Streptococcus mitis B6]
ATGGTCAACTATCCTCATAAAATTTCATCAAAAAAAAGCCAAACATCTCTTTCTCAACCAAAAAATTTCGCAAATCGAGG
AATGTCTTTTGAAAAGATGATTAATGCTACCAACGACTACTATTTGTCTCAGGGCTTGGCTGTTATACACAAGAAACCAA
CTCCCATTCAAATCGTACGAGTGGACTATCCACAACGAAGTCGTGCCAAGATTGTTGAAGCCTATTTTCGACAAGCTTCA
ACGACGGACTATTCTGGCGTTTATAAGGGATATTACATCGACTTTGAAGCCAAGGAAACAAAACAAAAACGTGCGATTCC
GATGAAAAATTTCCATCCACATCAGATTCAGCATATGGAACAAGTCCTTGCCCAACAAGGAATCTGCTTTGTCCTTCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTGCCGGCATTCGATTTGATTCGCTTCTATCATCAAGATAAGGGACAAAAA
TCAATGCCACTTGGATATATTCGAGAATATGGATATGAAATCAAGGCCGGCGCCTTCCCTCAAATTCCCTATCTCAATGT
TATCAAAGAACATTTATTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49

100

0.495

Multiple sequence alignment