Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   FDP16_RS01540 Genome accession   NZ_CP040798
Coordinates   290511..292487 (+) Length   658 a.a.
NCBI ID   WP_176798319.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 285511..297487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS01525 (FDP16_01585) - 286214..286915 (+) 702 WP_176798316.1 L-ribulose-5-phosphate 4-epimerase -
  FDP16_RS01530 (FDP16_01590) - 287092..288801 (+) 1710 WP_176798317.1 transcription antiterminator -
  FDP16_RS01535 (FDP16_01595) ulaG 289121..290212 (+) 1092 WP_176798318.1 L-ascorbate 6-phosphate lactonase -
  FDP16_RS01540 (FDP16_01600) recP/tkt 290511..292487 (+) 1977 WP_176798319.1 transketolase Machinery gene
  FDP16_RS01545 (FDP16_01605) yajC 292666..293001 (+) 336 WP_176798320.1 preprotein translocase subunit YajC -
  FDP16_RS01550 (FDP16_01610) - 293232..293981 (+) 750 WP_176798321.1 isoprenyl transferase -
  FDP16_RS01555 (FDP16_01615) - 294000..294803 (+) 804 WP_176798322.1 phosphatidate cytidylyltransferase -
  FDP16_RS01560 (FDP16_01625) eeP 295030..296286 (+) 1257 WP_176798323.1 RIP metalloprotease RseP Regulator

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71041.76 Da        Isoelectric Point: 4.6885

>NTDB_id=323263 FDP16_RS01540 WP_176798319.1 290511..292487(+) (recP/tkt) [Streptococcus sanguinis strain CGMH058]
MSQLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYDLFTKQLRINPEQPNWINRDRFVLSAGHGSMLLYALLHLSGFKD
VSMEEIKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNREGYPIFDHYTYVICGDGDLMEG
VSAEAASYAGLQKLDKLVVLYDSNDINLDGETKDSFTEDVRARYEAYGWHTALVEDGTDLAAIDAAINEAKASGKPSLIE
VKTVIGYGSPNKQGTNAVHGAPLGAEEAEATRQALGWDYAPFEIPEEVYADYRTNVAERGAAAYDAWKQLVEDYKQAHPE
LAAEVTAIIAGQDPVEIKPEDFPVLENGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQDDAHRLNR
NIQFGVREFAMGTILNGMALHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
AIPNLTVFRPADARETQAAWYLALKSQSTPTALVLTRQNLTVEDGTDFDKVAKGAYVVYETGADFDTILLASGSEVNLAV
AAAKALAAEGAKIRVVSVPSTELFDAQDAAYKEEILPNAVRRRLAIEMAASQPWYKYVGLDGAVIGIDQFGASAPASKVL
EEYGFTVEHVAEVVKNLK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=323263 FDP16_RS01540 WP_176798319.1 290511..292487(+) (recP/tkt) [Streptococcus sanguinis strain CGMH058]
ATGTCACAATTATCAGTTAATGCCATTCGCTTTTTAGGGATTGACGCGATTGAAAAGTCTAAGTCAGGTCACCCTGGTGT
AGTCATGGGCGCTGCGCCGATGGCTTACGACTTGTTTACTAAACAACTGCGTATTAATCCAGAACAGCCAAACTGGATTA
ACCGCGACCGCTTCGTCCTATCTGCAGGACATGGCTCTATGTTGCTTTATGCCTTGCTTCATCTGTCTGGCTTTAAAGAT
GTCAGCATGGAGGAAATCAAAAACTTCCGCCAATGGGGTTCTAAGACACCAGGTCACCCAGAGTTTGGGCATACAGCTGG
TGTTGATGCCACTACTGGCCCGCTAGGGCAGGGTATTTCTACAGCTACTGGATTTGCTCAGGCAGAGCGTTTCTTGGCTG
CCAAGTACAATCGTGAAGGCTATCCAATCTTTGACCATTACACTTATGTCATCTGTGGTGATGGCGATTTGATGGAGGGG
GTTTCAGCTGAGGCTGCTTCTTACGCTGGTCTGCAAAAGCTGGACAAGCTGGTTGTTCTCTATGATTCAAATGATATCAA
CCTAGATGGAGAGACCAAGGATTCCTTTACAGAAGATGTTCGTGCCCGCTATGAAGCCTATGGTTGGCATACTGCCTTGG
TGGAAGACGGAACAGACCTTGCAGCGATTGATGCAGCTATCAATGAAGCTAAAGCTTCTGGCAAGCCATCTTTGATTGAA
GTTAAGACGGTTATTGGTTACGGTTCTCCAAACAAGCAAGGAACTAATGCTGTTCACGGCGCGCCTCTTGGAGCAGAAGA
AGCAGAAGCTACTCGTCAAGCCTTGGGCTGGGACTATGCCCCGTTTGAGATTCCTGAGGAAGTCTATGCTGACTACCGTA
CAAATGTAGCAGAGCGTGGTGCAGCGGCTTACGATGCTTGGAAACAGTTAGTGGAGGACTACAAGCAAGCCCATCCAGAA
TTGGCGGCAGAAGTAACAGCCATCATTGCTGGTCAGGATCCAGTAGAAATCAAACCAGAAGATTTCCCAGTACTTGAAAA
TGGCTTCTCTCAAGCAACCCGTAATTCTAGTCAGGATGCCCTCAATGCAGCAGCTAAGGTCCTTCCAACTTTCCTCGGCG
GTTCTGCTGACTTGGCTCATTCCAATATGACCTACATCAAGGAAGACGGTCTGCAGGATGATGCCCACCGTCTCAACCGC
AACATCCAATTTGGTGTGCGCGAGTTTGCTATGGGAACAATTCTCAACGGTATGGCGCTTCATGGTGGTCTTCGCGTTTA
CGGTGGTACCTTCTTCGTCTTCTCAGACTATGTCAAGGCAGCTGTCCGTTTGTCTGCCCTGCAAGGTTTGCCAGTGACTT
ATGTCTTCACACACGATTCTATTGCAGTTGGTGAAGACGGGCCAACTCATGAGCCGATTGAGCATTTGGCTGGTCTGCGT
GCCATTCCAAACCTGACTGTTTTCCGCCCAGCAGATGCGCGTGAAACTCAGGCGGCTTGGTACCTAGCTCTTAAGAGTCA
ATCCACTCCGACTGCTCTGGTCTTGACCCGTCAAAATCTAACAGTTGAAGACGGCACAGACTTTGACAAGGTAGCTAAAG
GTGCTTATGTGGTCTACGAAACAGGGGCAGACTTCGATACAATCTTGCTGGCTTCTGGTTCTGAGGTTAATTTGGCTGTT
GCAGCTGCTAAAGCACTTGCAGCAGAAGGTGCTAAAATCCGCGTGGTCAGCGTGCCATCAACAGAGCTTTTTGATGCTCA
AGATGCAGCCTACAAAGAAGAAATTCTGCCAAATGCAGTTCGTCGCCGCCTAGCGATCGAGATGGCAGCTAGCCAGCCTT
GGTACAAGTATGTCGGTCTGGATGGTGCAGTTATCGGAATTGACCAGTTCGGTGCATCTGCTCCAGCAAGCAAGGTGCTT
GAAGAATACGGATTTACAGTTGAGCACGTAGCAGAAGTTGTTAAAAATCTTAAATAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, C-terminal domain (Transketolase_C)

(545-650)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

80.365

99.848

0.802