Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   FDP16_RS00240 Genome accession   NZ_CP040798
Coordinates   33176..33949 (+) Length   257 a.a.
NCBI ID   WP_176798126.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28176..38949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS00220 (FDP16_00225) - 29049..30014 (+) 966 WP_002928639.1 ribose-phosphate diphosphokinase -
  FDP16_RS00225 (FDP16_00230) - 30323..30892 (+) 570 WP_176798123.1 hypothetical protein -
  FDP16_RS00230 (FDP16_00235) srtB 30987..31832 (+) 846 WP_176798124.1 class B sortase, LPKTxAVK-specific -
  FDP16_RS00235 (FDP16_00240) - 32011..33183 (+) 1173 WP_176798125.1 pyridoxal phosphate-dependent aminotransferase -
  FDP16_RS00240 (FDP16_00245) recO 33176..33949 (+) 774 WP_176798126.1 DNA repair protein RecO Machinery gene
  FDP16_RS00245 (FDP16_00250) plsX 33955..34953 (+) 999 WP_176798127.1 phosphate acyltransferase PlsX -
  FDP16_RS00250 (FDP16_00255) - 34956..35204 (+) 249 WP_002926485.1 acyl carrier protein -
  FDP16_RS00255 (FDP16_00260) purC 35358..36065 (+) 708 WP_176798128.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29773.07 Da        Isoelectric Point: 5.5857

>NTDB_id=323251 FDP16_RS00240 WP_176798126.1 33176..33949(+) (recO) [Streptococcus sanguinis strain CGMH058]
MLKSLTNQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLAPVIQPLTAANLLMKINDDGLSYIEDYQDVVTYH
RINEDLFIMAYASYVAALADASLQDNQPDPALFAFLQKTLELMNDGLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTG
LPFDFSFKYSGVLCSDHYHQDERRCHLNPNLPFLLDQFQAVRFSELETISLKPDIKKQLRYFIDLLYDEYVGIHLKSKKF
IDSLGDWGSILKDKNEE

Nucleotide


Download         Length: 774 bp        

>NTDB_id=323251 FDP16_RS00240 WP_176798126.1 33176..33949(+) (recO) [Streptococcus sanguinis strain CGMH058]
ATGCTTAAATCTCTAACAAATCAAGGTTTGGTTCTCTATAACCGCAATTTCCGTGAGGATGATAAGCTGGTCAAGATCTT
TACGGAACAAGCTGGTAAGCGTATGTTTTTCGTCAAGCATGCTGGTAAATCCAAGCTAGCTCCTGTCATTCAGCCTTTGA
CTGCAGCGAACTTACTGATGAAAATCAATGATGATGGCCTTAGCTATATTGAGGACTATCAAGATGTGGTCACCTACCAT
CGGATCAATGAGGACTTATTCATCATGGCCTATGCCAGTTATGTGGCAGCCTTGGCAGATGCCAGTCTTCAGGACAATCA
GCCAGATCCGGCGCTCTTTGCCTTTCTGCAGAAAACCCTGGAACTGATGAATGATGGTCTGGACTATGAAGTGCTGACCA
ATATCTTTGAGATTCAGATTTTGTCACGTTTTGGAGTTTCGCTGAACTTCCATGACTGTGCCTTTTGTCATCGGACGGGT
CTACCTTTTGACTTCTCTTTCAAATATAGCGGAGTCCTTTGCTCTGATCATTACCATCAGGATGAACGCCGCTGTCATCT
GAATCCCAACCTTCCTTTTCTGCTGGACCAATTTCAGGCAGTCCGCTTTAGCGAATTGGAGACCATTTCTTTGAAGCCAG
ATATTAAAAAACAGTTGCGGTATTTTATCGACCTGCTCTATGATGAATATGTCGGCATCCATCTCAAATCCAAAAAATTT
ATAGATTCTCTGGGAGACTGGGGAAGCATTTTAAAAGATAAGAACGAGGAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(5-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

75.781

99.611

0.755