Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SMI_RS08820 Genome accession   NC_013853
Coordinates   1791513..1793879 (+) Length   788 a.a.
NCBI ID   WP_000454519.1    Uniprot ID   -
Organism   Streptococcus mitis B6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1786513..1798879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS08800 (smi_1734) - 1788842..1789390 (-) 549 WP_000624506.1 CvpA family protein -
  SMI_RS08805 (smi_1735) zapA 1789387..1789689 (-) 303 WP_000002023.1 cell division protein ZapA -
  SMI_RS08810 (smi_1736) rnhC 1789776..1790657 (+) 882 WP_000146887.1 ribonuclease HIII -
  SMI_RS08815 (smi_1737) lepB 1790661..1791275 (+) 615 WP_004245100.1 signal peptidase I -
  SMI_RS08820 (smi_1738) recD/recD2/recDB 1791513..1793879 (+) 2367 WP_000454519.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SMI_RS08825 (smi_1739) tig 1794075..1795358 (-) 1284 WP_000116489.1 trigger factor -
  SMI_RS08830 (smi_1740) - 1795514..1795916 (-) 403 Protein_1713 DNA alkylation repair protein -
  SMI_RS08840 (smi_1741) vraR 1795980..1796612 (-) 633 WP_000698413.1 response regulator transcription factor Regulator
  SMI_RS08845 (smi_1742) - 1796623..1797621 (-) 999 WP_000743693.1 sensor histidine kinase -
  SMI_RS08850 (smi_1743) liaF 1797618..1798316 (-) 699 WP_001224650.1 cell wall-active antibiotics response protein LiaF -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88326.11 Da        Isoelectric Point: 4.5651

>NTDB_id=32324 SMI_RS08820 WP_000454519.1 1791513..1793879(+) (recD/recD2/recDB) [Streptococcus mitis B6]
MEVYFSGTIERIIFENPSNFYRILLLEIDDTDAENFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYERA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGDNTIDEILQHPEKLEGIAGLSAKNRESFVSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQACMETGDTYVEA
RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGKQKSHDLETIKKH
IATVEEELGIEYDSIQKQAIYDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLKKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLHIPLIPQTRLEKIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRSGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPPQKDQLSFEAPQCHYRKGDKVIHLVNDAEINVFNGDLGAITDLIPGKYTESKQDEI
VIDFDGNEVSYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRAKSKLILLGELQSFNYATQ
HIGTARKTYLVERFSDLIENMEEKQPAVSETATSSTSEPSYILTEENWDSIPAMIGITDADLKEIFGK

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=32324 SMI_RS08820 WP_000454519.1 1791513..1793879(+) (recD/recD2/recDB) [Streptococcus mitis B6]
ATGGAAGTTTATTTTTCAGGAACCATTGAACGGATTATTTTTGAAAATCCCAGCAATTTTTATCGTATTCTTCTCCTAGA
AATCGACGATACAGACGCAGAAAACTTTGATGATTTTGAAATTATTGTCACTGGCACCATGGCTGATGTGATTGAAGGAG
AAGACTATACTTTTTGGGGACAAATTGTCCAGCACTCCAAGTATGGGGAACAACTGCAAATCAGCCGATATGAACGCGCA
AAACCAACTAGCAAGGGCTTGGTCAAGTACTTTTCAAGTAGCCATTTCAAGGGAATTGGTCTCAAGACAGCTCAGAAAAT
CGTGGACACCTATGGCGACAATACCATTGACGAAATTTTGCAACACCCCGAAAAGTTAGAAGGCATCGCAGGACTCTCTG
CCAAAAATCGCGAGTCTTTCGTCTCCACCCTCCGTCTCAACTACGGAACGGAGATGGTTTTGGCCAAACTAGCCAACTAC
GGCATTCCCAATAAATTAGCCTTTCAGATTCAAGACTTTTACAAGGAAGAAACCCTTGATGTGGTTGAAAATTATCCCTA
CCAGCTGGTTGAGGACATCAAGGGTTTGGGCTTTACCATTGCCGACCAATTAGCGGAAGAACTAGGCATCGAAAGTCAGG
CCCCTGAACGCTTCCGCGCCGGTCTAGTTCATAGTCTTTTTCAGGCCTGTATGGAAACAGGGGACACCTATGTTGAAGCA
CGGGATTTGCTAGAACAAACCCTTACTCTCCTTGAATCTTCCCGCCCCGTAGAACTGGATCCCAGCCAAGTAGCTCAAGA
GCTCTCCTACCTCATCGAAGAAGACAAGGTTCAGCAGATTGATACCAAAATCTTTGATAATAGCCTCTTTTTCGCTGAGG
AAGGCATCCGCAGTCACTTGGTTCGTATCCTTGAAAAAGGAAAACAGAAGAGTCATGATTTAGAAACCATTAAAAAACAT
ATCGCTACTGTCGAGGAAGAACTGGGGATTGAGTATGATAGCATTCAAAAACAAGCTATCTACGACGCTATTCAGAACAA
GGTCTTTATCCTGACAGGTGGGCCTGGTACTGGTAAAACAACTGTTATCAATGGGATTATCGCTGTATATGCCCTCTTAG
AAGGACTTGACCTCAAGAAAAAAAGCAACCTACCCATTCTCCTCGCCGCTCCAACTGGTCGTGCAGCGCGTCGTATGAAT
GAACTGACAGGCTTGCCAAGCGCGACTATACACCGTCATTTAGGAATGACAGGCGACGATGATACTAGTCATCTGGAAGA
TTATCTGGATGCTGACTTTATCATCGTAGATGAATTTTCCATGGTGGATACTTGGCTGGCCAATCAACTCTTCTCCAACA
TCTCTTCTAACAGTAAGATCCTCATCGTGGGCGACAGCGACCAGTTGCCTTCTGTCAGTCCTGGACAGGTTCTAGCGGAT
CTGCTTCATATTCCCTTGATTCCTCAGACTCGCTTGGAAAAAATTTACCGGCAAAGCGAAGAATCAACTATCGTTACCCT
AGCTAGTCAGATTCGACAGGGCATCTTGCCTGCTGATTTCACCCAGAAAAAAGCAGACCGTTCCTACTTTGAAATTGCTA
GCGGCCATATTCCAGCTACGATTGAAAAAATCTTAGGCGCTGCCCTAAGAAGTGGTATCCCTGCCCGTGATATCCAAGTT
CTGGCTCCCATGTATCGAGGAACTGCAGGGATTGACGCTATCAATCAGCTCATGCAAGACCTGCTCAACCCACCACAAAA
AGATCAACTCAGTTTTGAAGCTCCCCAGTGCCATTATCGTAAGGGCGACAAGGTCATTCATTTGGTCAACGATGCTGAAA
TCAATGTCTTTAATGGAGATTTAGGAGCCATCACAGACCTGATTCCTGGTAAATACACCGAGTCGAAGCAAGATGAGATT
GTCATTGATTTTGATGGCAACGAGGTCTCTTACCCACGTAACGAATGGTACAAGATTCGCCTGGCCTATGCCATGAGCAT
CCATAAATCACAGGGAAGTGAGTTCCCTGTTGTCATCCTACCTATCACTAGTGCTAGTAGGCGTATGCTGGAGCGAAACC
TCATCTATACAGCAATTACACGCGCCAAAAGCAAGCTTATCTTACTAGGTGAATTACAGTCCTTCAACTATGCTACCCAA
CATATCGGAACTGCCCGAAAAACCTATCTGGTTGAACGCTTCAGTGATTTAATTGAAAATATGGAAGAAAAGCAACCAGC
GGTCTCTGAAACTGCCACATCAAGTACCTCTGAACCATCCTACATCCTAACAGAAGAAAACTGGGACAGCATCCCAGCCA
TGATTGGGATTACAGATGCAGACCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)

AAA domain (AAA_30)

(332-520)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.722

95.812

0.4

Multiple sequence alignment