Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SMI_RS08045 Genome accession   NC_013853
Coordinates   1630499..1632721 (-) Length   740 a.a.
NCBI ID   WP_164925525.1    Uniprot ID   -
Organism   Streptococcus mitis B6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1625499..1637721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS08025 (smi_1584) - 1626287..1627507 (-) 1221 WP_000286553.1 aminoacyltransferase -
  SMI_RS08030 (smi_1585) - 1627619..1628398 (-) 780 WP_000290036.1 alpha/beta hydrolase -
  SMI_RS08035 (smi_1586) - 1628467..1630128 (-) 1662 WP_000065643.1 ribonuclease J -
  SMI_RS10850 - 1630170..1630391 (-) 222 WP_000701920.1 hypothetical protein -
  SMI_RS08045 (smi_1587) recJ 1630499..1632721 (-) 2223 WP_164925525.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SMI_RS08050 (smi_1588) - 1632897..1633655 (+) 759 WP_001229573.1 amino acid ABC transporter ATP-binding protein -
  SMI_RS08055 (smi_1589) - 1633666..1634460 (+) 795 WP_000726181.1 transporter substrate-binding domain-containing protein -
  SMI_RS08060 (smi_1590) - 1634473..1635151 (+) 679 Protein_1561 amino acid ABC transporter permease -
  SMI_RS08065 (smi_1591) - 1635161..1635820 (+) 660 WP_000443889.1 amino acid ABC transporter permease -
  SMI_RS08070 (smi_1592) - 1636030..1637160 (-) 1131 WP_000229951.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 82547.11 Da        Isoelectric Point: 4.3947

>NTDB_id=32320 SMI_RS08045 WP_164925525.1 1630499..1632721(-) (recJ) [Streptococcus mitis B6]
MITPTYEWQFAPQVEDADFTKIAKKAGLGSEVARLLFERGIQDQESLKKFLEPSLEDLHDPYLLHDMDKAVERIRQAIEE
GENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPETLPDAYAIVHPEHPDANYPFKYLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
ILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLDDPNPAIDLLTGFDDEEAHEIALMIHQKN
EERKEIVQSIYEEAKTMVDPEKKVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDP
HRDLFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADAAGKNKLNLDEELNLETLSLETVKSFERLAPFGMDNQKP
VFYIKDFQVESARTMGAGNAHLKLKISKGEASFEVVAFGQGRWATEFAQTKNLELAVKLSVNQWNGQTALQLMMVDARVE
GVQLFNIRGKNAVLPEGVPVLDFAGEVPNIAASEAIVVKTIPEDITQLKTIFQKQNFSAVYFKNDIDKAYYLTGYGTRDQ
FAKLYKTIYQFPEFDIRYKLKDLATYLNIQQILLVKMIQVFEELGFVTIKDGVMTVNKEAPKREIGESRIYQNLKQTVKD
QEMMALGTVQEIYDFLMEKE

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=32320 SMI_RS08045 WP_164925525.1 1630499..1632721(-) (recJ) [Streptococcus mitis B6]
TTGATAACACCTACTTATGAATGGCAGTTTGCCCCGCAGGTTGAAGATGCGGATTTTACAAAGATAGCCAAGAAGGCTGG
ACTGGGTTCTGAGGTGGCTCGGTTATTATTTGAGAGAGGGATTCAGGACCAAGAAAGTCTGAAGAAATTTTTAGAACCTT
CTTTGGAGGACTTGCATGACCCTTATCTGCTCCATGATATGGACAAGGCAGTGGAACGGATTCGTCAGGCCATTGAAGAG
GGGGAAAATATTCTCGTTTATGGAGACTACGATGCGGATGGCATGACTTCGGCGTCAATTGTTAAGGAAAGTTTGGAACA
ACTTGGTGCCGAGTGCCGTGTTTACTTGCCCAATCGTTTTACTGATGGCTATGGTCCAAATGCTAGTGTTTATAAATACT
TTATCGAGCAAGAAGGAATTTCTTTGATTGTGACGGTGGACAATGGGGTTGCTGGTCATGAGGCTATTGAATTGGCCCAG
TCTATGGGAGTGGATGTCATTGTGACAGACCACCATTCCATGCCTGAAACCCTCCCTGATGCCTATGCCATTGTCCATCC
TGAACATCCGGATGCGAACTATCCTTTTAAATATTTGGCTGGTTGCGGAGTGGCTTTCAAGCTGGCTTGTGCCCTGTTAG
AAGAAGTACAAGTGGAATTGCTTGATTTGGTTGCTATTGGTACCATTGCTGATATGGTTAGTTTGACAGATGAGAACCGT
ATCTTGGTTCAATATGGTCTGGAAATGTTAGGTCATACCCAGCGTATTGGCCTACAAGAAATGCTGGACATGGCTGGGAT
TGCCGCCAACGAAGTAACAGAAGAAACGGTTGGTTTCCAGATTGCCCCTCGTTTGAATGCCTTGGGACGTCTAGATGATC
CTAATCCCGCTATTGATTTGTTGACTGGATTTGACGACGAGGAAGCTCACGAGATTGCCCTTATGATTCATCAGAAAAAC
GAAGAGCGCAAGGAAATCGTCCAGTCTATCTATGAAGAAGCTAAGACCATGGTGGACCCTGAGAAGAAGGTCCAAGTCTT
GGCCAAGGAAGGCTGGAATCCTGGGGTTCTAGGAATCGTGGCTGGTCGTTTGTTGGAAGAATTGGGACAGACAGTCATTG
TTCTTAATATAGAAGACGGTCGTGCTAAGGGCAGTGCTCGTAGTGTGGAAGCGGTCGATATTTTTGAGGCTCTAGATCCC
CATCGAGACCTCTTTATCGCCTTTGGTGGCCATGCTGGTGCGGCTGGAATGACGCTGGAAGTGGAGAAACTCTCAGATTT
ATCTCAGGTCTTGGAAGATTATGTTCGTGAAAAAGGTGCAGATGCTGCTGGCAAGAACAAGTTAAATCTAGATGAAGAAC
TGAATTTGGAGACACTTAGCTTGGAAACGGTCAAAAGTTTTGAACGTTTAGCTCCCTTTGGAATGGACAATCAGAAACCT
GTCTTTTATATAAAGGATTTTCAGGTCGAAAGTGCCCGTACTATGGGGGCAGGCAATGCTCATCTCAAGTTGAAAATTTC
CAAAGGTGAGGCGAGTTTTGAAGTGGTAGCCTTTGGCCAAGGCAGATGGGCGACAGAGTTTGCTCAAACCAAGAATTTAG
AGCTGGCAGTCAAATTGTCTGTCAACCAATGGAATGGCCAAACTGCCCTCCAGTTGATGATGGTGGATGCGCGTGTGGAG
GGTGTTCAACTCTTTAACATCCGTGGGAAGAATGCAGTCTTGCCAGAAGGAGTTCCAGTCTTGGATTTTGCTGGAGAAGT
GCCAAATATAGCGGCTAGTGAAGCTATTGTCGTGAAAACCATTCCTGAAGATATTACTCAGCTGAAGACCATTTTTCAGA
AACAGAATTTTTCCGCTGTCTATTTCAAAAATGATATTGATAAGGCCTACTATCTGACAGGTTATGGGACTAGAGATCAG
TTTGCAAAATTGTACAAGACTATCTACCAGTTTCCAGAGTTTGATATTCGCTATAAACTGAAGGATTTGGCCACTTATCT
CAATATTCAACAAATCTTACTTGTCAAGATGATTCAAGTCTTTGAAGAACTAGGCTTTGTGACCATCAAAGATGGTGTTA
TGACAGTCAATAAGGAAGCGCCAAAGCGAGAGATAGGAGAAAGTCGGATTTACCAAAATCTCAAACAAACCGTTAAAGAC
CAAGAAATGATGGCGCTGGGTACCGTGCAAGAAATTTATGACTTTTTAATGGAAAAAGAATAG

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-735)

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

97.162

100

0.972
  recJ Bacillus subtilis subsp. subtilis str. 168

36.917

100

0.385

Multiple sequence alignment