Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FF962_RS20690 Genome accession   NZ_CP040684
Coordinates   4301331..4302692 (-) Length   453 a.a.
NCBI ID   WP_009877389.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain C79     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4296331..4307692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FF962_RS20655 (FF962_20655) thiS 4296565..4296765 (-) 201 WP_003084514.1 sulfur carrier protein ThiS -
  FF962_RS20660 (FF962_20660) - 4296868..4297245 (-) 378 WP_021263126.1 DUF423 domain-containing protein -
  FF962_RS20665 (FF962_20665) mtgA 4297282..4298013 (+) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  FF962_RS20670 (FF962_20670) - 4298018..4298623 (-) 606 WP_003084511.1 hypothetical protein -
  FF962_RS20675 (FF962_20675) rpoH 4298688..4299542 (-) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  FF962_RS20680 (FF962_20680) ftsX 4299656..4300663 (-) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  FF962_RS20685 (FF962_20685) ftsE 4300663..4301334 (-) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  FF962_RS20690 (FF962_20690) pilA 4301331..4302692 (-) 1362 WP_009877389.1 signal recognition particle-docking protein FtsY Machinery gene
  FF962_RS20695 (FF962_20695) - 4302813..4304210 (+) 1398 WP_003084498.1 M16 family metallopeptidase -
  FF962_RS20700 (FF962_20700) - 4304203..4305690 (+) 1488 WP_023100747.1 M16 family metallopeptidase -
  FF962_RS20705 (FF962_20705) rsmD 4305690..4306286 (+) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FF962_RS20710 (FF962_20710) - 4306289..4306855 (+) 567 WP_003084491.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48165.59 Da        Isoelectric Point: 4.5525

>NTDB_id=323199 FF962_RS20690 WP_009877389.1 4301331..4302692(-) (pilA) [Pseudomonas aeruginosa strain C79]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSA
SIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQ
VDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFD
AVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALT
KLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=323199 FF962_RS20690 WP_009877389.1 4301331..4302692(-) (pilA) [Pseudomonas aeruginosa strain C79]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCCGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCA
ACCCGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCG
CCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGGCTGTCCAAGACCAGCGCC
AGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCG
CCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGC
TGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAG
GTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCT
GGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCTGCCGCCGTGGAGCAGT
TGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGAC
GCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCT
GATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCG
ACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACC
AAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGT
CGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCAT
GA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(248-447)

SRP54-type protein, helical bundle domain (SRP54_N)

(163-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.126

96.026

0.453

Multiple sequence alignment