Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   FGE23_RS19680 Genome accession   NZ_CP040672
Coordinates   3950137..3951267 (-) Length   376 a.a.
NCBI ID   WP_070082263.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3945137..3956267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS19650 - 3945512..3946357 (-) 846 WP_077722742.1 glucosaminidase domain-containing protein -
  FGE23_RS19655 hmpA 3946499..3947674 (-) 1176 WP_102422047.1 NO-inducible flavohemoprotein -
  FGE23_RS19660 - 3947892..3948533 (+) 642 WP_071392221.1 cupin domain-containing protein -
  FGE23_RS19665 - 3948601..3948921 (-) 321 WP_146277404.1 hypothetical protein -
  FGE23_RS20100 - 3949640..3949824 (+) 185 Protein_3798 hypothetical protein -
  FGE23_RS19680 rapC 3950137..3951267 (-) 1131 WP_070082263.1 Rap family tetratricopeptide repeat protein Regulator
  FGE23_RS19685 - 3951588..3951791 (+) 204 WP_015387806.1 hypothetical protein -
  FGE23_RS20190 - 3951915..3952043 (+) 129 WP_255219924.1 hypothetical protein -
  FGE23_RS19745 - 3952277..3952561 (-) 285 WP_161596043.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44368.74 Da        Isoelectric Point: 6.3556

>NTDB_id=323149 FGE23_RS19680 WP_070082263.1 3950137..3951267(-) (rapC) [Bacillus amyloliquefaciens strain X030]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRFEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYSNAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIYQGDKLFESLQKYLEALYINAIDQMGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYFYHQKMIQTQKQIQRGECLYEF

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=323149 FGE23_RS19680 WP_070082263.1 3950137..3951267(-) (rapC) [Bacillus amyloliquefaciens strain X030]
GTGAGTTCTGTTTTACCGTCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATAAATGAGATGGAAGAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTCATGCTGGATTATTTAGAACCGGTGACTACCCGTGTGAGACCGACAATTGACGAG
CTGCTGGAAAAAATCGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTGCTATTACTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAGGTCCGGAAAATTCAATGTCTATTCGTCATCTCTGG
GAATTATGTTGACTTTAAACGCTTTGAAAAAAGTTTGCCTCATTTAGAAAAAGCTTTAGAGTTATCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACCTAGAAGAATACAGTAATGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATATCTGAAAAGTATAAATTGGGTAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCAAAAAGGGACTTTCATCAGCGATATATCAAGGGG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATATATTAATGCAATAGACCAAATGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAATC
AAAGCAATATGACAAATCTTATTTTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(193-252)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.591

100

0.449
  rapF Bacillus subtilis subsp. subtilis str. 168

40.106

100

0.404

Multiple sequence alignment