Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   FGE23_RS16075 Genome accession   NZ_CP040672
Coordinates   3238926..3240416 (-) Length   496 a.a.
NCBI ID   WP_003153405.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3233926..3245416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS16045 gudB 3234003..3235277 (-) 1275 WP_039254676.1 NAD-specific glutamate dehydrogenase -
  FGE23_RS16050 - 3235438..3236022 (-) 585 WP_003153412.1 genetic competence negative regulator -
  FGE23_RS16055 - 3236174..3236962 (-) 789 WP_101562237.1 metallophosphoesterase -
  FGE23_RS16060 - 3237049..3237507 (-) 459 WP_007409443.1 YpbF family protein -
  FGE23_RS16065 - 3237576..3238346 (-) 771 WP_015388058.1 LysM peptidoglycan-binding domain-containing protein -
  FGE23_RS16070 - 3238324..3238911 (-) 588 WP_014305323.1 CPBP family intramembrane glutamic endopeptidase -
  FGE23_RS16075 recS 3238926..3240416 (-) 1491 WP_003153405.1 ATP-dependent DNA helicase RecQ Machinery gene
  FGE23_RS16080 - 3240409..3241467 (-) 1059 WP_146277108.1 helix-turn-helix domain-containing protein -
  FGE23_RS16085 - 3241736..3241984 (+) 249 WP_003153403.1 ferredoxin -
  FGE23_RS16090 - 3242124..3242696 (-) 573 WP_003153402.1 ECF transporter S component -
  FGE23_RS16095 serA 3243184..3244761 (+) 1578 WP_069013358.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56030.09 Da        Isoelectric Point: 6.3781

>NTDB_id=323115 FGE23_RS16075 WP_003153405.1 3238926..3240416(-) (recS) [Bacillus amyloliquefaciens strain X030]
MTELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNAEKISRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTDDERKLRDVLINKGVQETQARTAVHLYLQGKTT
KEQLQEELTYRVEKKLRKMNRFSALLERKECIRKALLSYFDESYEPEGQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=323115 FGE23_RS16075 WP_003153405.1 3238926..3240416(-) (recS) [Bacillus amyloliquefaciens strain X030]
ATGACTGAGCTGCATAAAGCTTTATCCAGGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAGGATACGATCGCCATGCTTCCGACCGGCGGAGGGAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCACCGCTTCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCAAAAGGA
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATTCTCAGCAACATCAGCCGGTATAA
ATTTCTCTATATGTCTCCTGAAGCCCTTTCTTCACCTTATGTACTGAACCGTTTGAAAAACGTTCCGGTCAGTTTATTTG
TTATTGATGAAGCTCATTGCATATCGGAATGGGGACATGATTTCAGGCCTGATTATTCGAAGCTCGGGCCTTTCAGACAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACTGCAACAGCGACAAAAGAAACGCTCAGAGACGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAATATTCTCCTGGCGGCAGAACATTTGGCTGATAATG
CCGAAAAAATAAGCAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGCCCCGGTATCATATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAATGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGTATGGATACAGGGGA
CAGAATCTTGATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATCTGCTGTACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCTGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGCCTGTCTGATTATGATCTGGAAGGCATTTTGGCCGTCATACGGGATGCCGGTACGGATGATGAGCGAAAGCTTC
GGGACGTTCTGATCAATAAAGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCACCTGTATCTGCAAGGAAAAACCACA
AAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAGAAGCTGCGTAAAATGAACCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAAAAGCGCTGCTGTCTTATTTTGATGAATCGTATGAGCCTGAAGGCCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGGAAAAACATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGTTCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-178)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.548

100

0.685

Multiple sequence alignment