Detailed information
Bioinformatically predicted
Overview
| Name | rapC | Type | Regulator |
| Locus tag | FGE23_RS15310 | Genome accession | NZ_CP040672 |
| Coordinates | 3110204..3111340 (+) | Length | 378 a.a. |
| NCBI ID | WP_003153656.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain X030 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3105204..3116340
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGE23_RS15270 | - | 3106648..3107073 (+) | 426 | WP_003153663.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| FGE23_RS15275 | sprB | 3107107..3107283 (-) | 177 | WP_003153662.1 | recombination directionality factor SprB | - |
| FGE23_RS15285 | - | 3107635..3107910 (-) | 276 | WP_225979761.1 | DUF3221 domain-containing protein | - |
| FGE23_RS15295 | - | 3108440..3108676 (+) | 237 | WP_063636671.1 | hypothetical protein | - |
| FGE23_RS15300 | - | 3108800..3109174 (+) | 375 | WP_048367415.1 | YoqO family protein | - |
| FGE23_RS20335 | - | 3109191..3109269 (-) | 79 | Protein_2950 | hypothetical protein | - |
| FGE23_RS15305 | - | 3109408..3109860 (-) | 453 | WP_003153657.1 | hypothetical protein | - |
| FGE23_RS15310 | rapC | 3110204..3111340 (+) | 1137 | WP_003153656.1 | Rap family tetratricopeptide repeat protein | Regulator |
| FGE23_RS15315 | - | 3111330..3111512 (+) | 183 | WP_003153655.1 | hypothetical protein | - |
| FGE23_RS15320 | - | 3111838..3112861 (+) | 1024 | Protein_2954 | hypothetical protein | - |
| FGE23_RS15325 | - | 3112921..3113280 (-) | 360 | WP_003153654.1 | hypothetical protein | - |
| FGE23_RS15330 | - | 3113286..3113753 (-) | 468 | WP_146277042.1 | DUF4879 domain-containing protein | - |
| FGE23_RS15335 | - | 3113896..3113985 (+) | 90 | WP_165698151.1 | putative holin-like toxin | - |
| FGE23_RS15340 | - | 3114261..3114596 (-) | 336 | WP_146277044.1 | hypothetical protein | - |
| FGE23_RS15345 | - | 3114811..3115272 (-) | 462 | WP_146277046.1 | GNAT family N-acetyltransferase | - |
| FGE23_RS15350 | - | 3115366..3115962 (-) | 597 | WP_146277048.1 | SMI1/KNR4 family protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 44598.15 Da Isoelectric Point: 4.8529
>NTDB_id=323112 FGE23_RS15310 WP_003153656.1 3110204..3111340(+) (rapC) [Bacillus amyloliquefaciens strain X030]
MEQLISSSKVGLKINEWYKYIRLFSVADAEILKGEVEQEIEHMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPKIS
DLSEEIESKQSDLKGILEYYFNFFHGMYEFEQYEYLKAISFYNRAEKKISIVPDEIERAEFHYKVAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEIDMPRLIGSSLYNLGLCSFTTGHMEKAL
EYFKEGVSIYQSNSLHNSSRLLDILLMLAKTHFKLFNTVDGKQVCEQGLMLSKELNDDVLGKMFDFLMGLFVENDKERLF
KILDYLESKAMLSDVEDLATDAAMYYNVNEDHKVATAFYEKVLYARKQIQRGDCLYEI
MEQLISSSKVGLKINEWYKYIRLFSVADAEILKGEVEQEIEHMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPKIS
DLSEEIESKQSDLKGILEYYFNFFHGMYEFEQYEYLKAISFYNRAEKKISIVPDEIERAEFHYKVAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEIDMPRLIGSSLYNLGLCSFTTGHMEKAL
EYFKEGVSIYQSNSLHNSSRLLDILLMLAKTHFKLFNTVDGKQVCEQGLMLSKELNDDVLGKMFDFLMGLFVENDKERLF
KILDYLESKAMLSDVEDLATDAAMYYNVNEDHKVATAFYEKVLYARKQIQRGDCLYEI
Nucleotide
Download Length: 1137 bp
>NTDB_id=323112 FGE23_RS15310 WP_003153656.1 3110204..3111340(+) (rapC) [Bacillus amyloliquefaciens strain X030]
TTGGAGCAATTGATCTCTTCTTCAAAGGTTGGCTTAAAAATCAATGAATGGTACAAATATATAAGATTATTCAGTGTTGC
AGATGCAGAAATTCTAAAGGGTGAAGTTGAACAAGAAATAGAGCATATGGAAGAAGATCAAGATTTATTGTTGTACTACT
CGCTCATGTGTTTTCGACATCAATTAATGCTTGATTACCTTGAACCAAAAACCATGAATGAAGAACGACCTAAAATTTCA
GACTTATCAGAAGAGATCGAAAGTAAACAAAGCGATCTAAAAGGAATTCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAGTACGAATATCTTAAAGCAATAAGTTTTTACAACCGAGCTGAAAAGAAGATATCTATTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCACTATAAAGTTGCTGAAGTGTACTATCACATGAAGCAAACCCACATGTCTATGCAT
CATATTGTTCAAGCAATAGAAACCTACAAAGCACACGAGACATACTCAATAAGAGTAATCCAATGTTCATTCGTCATCGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAAGCAATACCGCATTTCATGAATGCATTAAAACAAGCACAAGAAATTG
ATATGCCGCGGTTAATAGGTTCTTCTTTGTACAATCTCGGTTTATGCTCATTTACAACAGGACATATGGAGAAGGCATTG
GAGTATTTTAAAGAAGGCGTCTCAATTTATCAAAGTAATTCTCTTCACAATTCTAGCCGACTGCTTGACATACTTCTAAT
GTTGGCAAAAACGCACTTTAAATTATTCAACACGGTTGATGGAAAACAGGTTTGTGAACAAGGTCTTATGCTGTCAAAGG
AGTTGAACGATGACGTATTAGGAAAAATGTTTGATTTTCTTATGGGTTTATTCGTTGAGAATGACAAAGAACGACTTTTT
AAAATCTTAGATTACTTAGAATCAAAAGCTATGCTTTCAGATGTGGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTACAGCCTTTTATGAGAAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA
TTGGAGCAATTGATCTCTTCTTCAAAGGTTGGCTTAAAAATCAATGAATGGTACAAATATATAAGATTATTCAGTGTTGC
AGATGCAGAAATTCTAAAGGGTGAAGTTGAACAAGAAATAGAGCATATGGAAGAAGATCAAGATTTATTGTTGTACTACT
CGCTCATGTGTTTTCGACATCAATTAATGCTTGATTACCTTGAACCAAAAACCATGAATGAAGAACGACCTAAAATTTCA
GACTTATCAGAAGAGATCGAAAGTAAACAAAGCGATCTAAAAGGAATTCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAGTACGAATATCTTAAAGCAATAAGTTTTTACAACCGAGCTGAAAAGAAGATATCTATTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCACTATAAAGTTGCTGAAGTGTACTATCACATGAAGCAAACCCACATGTCTATGCAT
CATATTGTTCAAGCAATAGAAACCTACAAAGCACACGAGACATACTCAATAAGAGTAATCCAATGTTCATTCGTCATCGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAAGCAATACCGCATTTCATGAATGCATTAAAACAAGCACAAGAAATTG
ATATGCCGCGGTTAATAGGTTCTTCTTTGTACAATCTCGGTTTATGCTCATTTACAACAGGACATATGGAGAAGGCATTG
GAGTATTTTAAAGAAGGCGTCTCAATTTATCAAAGTAATTCTCTTCACAATTCTAGCCGACTGCTTGACATACTTCTAAT
GTTGGCAAAAACGCACTTTAAATTATTCAACACGGTTGATGGAAAACAGGTTTGTGAACAAGGTCTTATGCTGTCAAAGG
AGTTGAACGATGACGTATTAGGAAAAATGTTTGATTTTCTTATGGGTTTATTCGTTGAGAATGACAAAGAACGACTTTTT
AAAATCTTAGATTACTTAGAATCAAAAGCTATGCTTTCAGATGTGGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTACAGCCTTTTATGAGAAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
46.296 |
100 |
0.463 |
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
45.669 |
100 |
0.46 |