Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FGE23_RS07895 Genome accession   NZ_CP040672
Coordinates   1534887..1535522 (+) Length   211 a.a.
NCBI ID   WP_003156063.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1529887..1540522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS07855 - 1530123..1530701 (+) 579 WP_102422381.1 TetR/AcrR family transcriptional regulator -
  FGE23_RS20290 - 1530773..1530850 (-) 78 Protein_1503 hypothetical protein -
  FGE23_RS07860 - 1530902..1531201 (-) 300 WP_146276211.1 spore coat protein -
  FGE23_RS07865 - 1531216..1531413 (-) 198 WP_003156073.1 hypothetical protein -
  FGE23_RS07870 - 1531432..1532568 (-) 1137 WP_003156072.1 zinc-dependent alcohol dehydrogenase -
  FGE23_RS07875 - 1532587..1532955 (-) 369 WP_070081429.1 spore coat protein -
  FGE23_RS07880 - 1532973..1533218 (-) 246 WP_101562767.1 spore gernimation protein GerQ -
  FGE23_RS07890 - 1533734..1534894 (+) 1161 WP_192897772.1 sensor histidine kinase -
  FGE23_RS07895 vraR 1534887..1535522 (+) 636 WP_003156063.1 response regulator transcription factor Regulator
  FGE23_RS07900 - 1535621..1537774 (+) 2154 WP_146276215.1 MMPL family transporter -
  FGE23_RS07905 - 1537808..1538530 (-) 723 WP_029326195.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  FGE23_RS07910 abc-f 1538666..1540294 (-) 1629 WP_146276217.1 ribosomal protection-like ABC-F family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23563.30 Da        Isoelectric Point: 5.6500

>NTDB_id=323056 FGE23_RS07895 WP_003156063.1 1534887..1535522(+) (vraR) [Bacillus amyloliquefaciens strain X030]
MYKVLIADDHLVVREGLKLLIETNDHYTITGEAENGKTAVRLAAELKPDVILMDLYMPEMSGLEAIKQIKEHSDVPIIIL
TTYNEDHLMIEGIESGANGYLLKDTSSETLFHTMDAAVRGEVLLQPDILRRFREMKMERANANETQLTDKEIIVLQAVAK
GHKSKAIAFDLGISERTVKARLTSIYNKLGADSRTEAVTIAMQKGILKLNI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=323056 FGE23_RS07895 WP_003156063.1 1534887..1535522(+) (vraR) [Bacillus amyloliquefaciens strain X030]
ATGTATAAAGTGTTAATAGCAGATGACCATCTTGTCGTCAGAGAAGGTCTGAAGCTTTTGATAGAAACAAATGACCATTA
CACCATAACGGGAGAGGCGGAAAACGGGAAAACCGCCGTCCGCCTTGCAGCGGAACTAAAGCCCGATGTCATTCTCATGG
ACCTGTACATGCCGGAAATGAGCGGGCTGGAAGCCATTAAACAGATAAAAGAGCATTCTGATGTGCCGATCATTATTTTG
ACGACCTATAATGAAGATCATCTGATGATAGAAGGCATCGAATCAGGCGCGAACGGTTATCTGCTGAAGGACACAAGCTC
AGAAACCTTATTTCATACGATGGATGCGGCGGTGAGGGGAGAAGTGCTTCTGCAGCCGGACATCTTGCGGCGTTTCCGGG
AAATGAAAATGGAACGGGCAAATGCCAATGAAACACAGCTGACGGACAAGGAAATCATAGTTCTGCAAGCCGTTGCGAAA
GGACATAAAAGCAAAGCGATCGCCTTCGATTTAGGAATCTCAGAGCGGACGGTAAAAGCGAGATTAACATCGATTTATAA
CAAATTAGGCGCTGATTCGCGGACGGAAGCCGTCACCATTGCCATGCAAAAAGGCATTCTGAAACTGAATATATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-201)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.842

99.052

0.365

Multiple sequence alignment