Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   FGE23_RS06565 Genome accession   NZ_CP040672
Coordinates   1272990..1274111 (+) Length   373 a.a.
NCBI ID   WP_146276062.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1267990..1279111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS06545 - 1268297..1269292 (-) 996 WP_123117589.1 DUF5105 domain-containing protein -
  FGE23_RS06550 - 1269421..1270821 (+) 1401 WP_146276058.1 YcdB/YcdC domain-containing protein -
  FGE23_RS06555 - 1271022..1272380 (+) 1359 WP_060563027.1 YcdB/YcdC domain-containing protein -
  FGE23_RS06560 - 1272377..1272880 (-) 504 WP_146276060.1 M15 family metallopeptidase -
  FGE23_RS06565 rapF 1272990..1274111 (+) 1122 WP_146276062.1 tetratricopeptide repeat protein Regulator
  FGE23_RS06570 - 1274227..1275006 (+) 780 WP_146276064.1 glucose 1-dehydrogenase -
  FGE23_RS06575 - 1275089..1276768 (+) 1680 WP_146276066.1 alpha-glucosidase -
  FGE23_RS06580 - 1276954..1277913 (+) 960 WP_003156656.1 metal ABC transporter substrate-binding protein -
  FGE23_RS06585 - 1277968..1278663 (+) 696 WP_003156655.1 metal ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 44319.55 Da        Isoelectric Point: 5.1664

>NTDB_id=323043 FGE23_RS06565 WP_146276062.1 1272990..1274111(+) (rapF) [Bacillus amyloliquefaciens strain X030]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAADWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=323043 FGE23_RS06565 WP_146276062.1 1272990..1274111(+) (rapF) [Bacillus amyloliquefaciens strain X030]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTTAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTAGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGAGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACACA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGATTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATCCTGGAATCAAAGGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Tetratricopeptide repeat (TPR_12)

(187-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

42.588

99.464

0.424
  rapC Bacillus subtilis subsp. subtilis str. 168

40.054

99.732

0.399

Multiple sequence alignment