Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   FGE23_RS04640 Genome accession   NZ_CP040672
Coordinates   927573..928367 (-) Length   264 a.a.
NCBI ID   WP_146275945.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 922573..933367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS04620 - 922914..923921 (-) 1008 WP_146275939.1 ThiF family adenylyltransferase -
  FGE23_RS04625 - 924153..925571 (-) 1419 WP_146275941.1 cell wall metabolism sensor histidine kinase WalK -
  FGE23_RS04630 - 925568..925780 (-) 213 WP_077723101.1 winged helix-turn-helix domain-containing protein -
  FGE23_RS04635 htrA 926290..927486 (-) 1197 WP_146275943.1 S1C family serine protease Regulator
  FGE23_RS04640 vicX 927573..928367 (-) 795 WP_146275945.1 MBL fold metallo-hydrolase Regulator
  FGE23_RS04645 - 928382..929221 (-) 840 WP_004393108.1 two-component system regulatory protein YycI -
  FGE23_RS04650 yycH 929208..930566 (-) 1359 WP_004393107.1 two-component system activity regulator YycH -
  FGE23_RS04655 walK 930556..932391 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  FGE23_RS04660 walR 932398..933105 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29112.16 Da        Isoelectric Point: 6.0280

>NTDB_id=323029 FGE23_RS04640 WP_146275945.1 927573..928367(-) (vicX) [Bacillus amyloliquefaciens strain X030]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMERIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALVTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=323029 FGE23_RS04640 WP_146275945.1 927573..928367(-) (vicX) [Bacillus amyloliquefaciens strain X030]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCACTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAGAATCGGCCGTAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTACCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGATACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTGAAATCTTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTTTACGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGGTGACGGACACCGGATATGTGAGCGACAGAATGAAAGGCATCATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGACGTCGGCATGCTGCAAATGGGCAGATACCCTTGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCGAATGAAGATGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATTCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527

Multiple sequence alignment