Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   VS_RS13630 Genome accession   NC_011753
Coordinates   3053866..3054870 (+) Length   334 a.a.
NCBI ID   WP_009848882.1    Uniprot ID   -
Organism   Vibrio atlanticus     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3048866..3059870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS13615 (VS_2896) - 3049254..3050543 (-) 1290 WP_009848885.1 malic enzyme-like NAD(P)-binding protein -
  VS_RS13620 (VS_2897) rpmE 3050875..3051093 (-) 219 WP_009848884.1 50S ribosomal protein L31 -
  VS_RS13625 (VS_2898) priA 3051424..3053625 (+) 2202 WP_012604963.1 primosomal protein N' -
  VS_RS13630 (VS_2899) cytR 3053866..3054870 (+) 1005 WP_009848882.1 DNA-binding transcriptional regulator CytR Regulator
  VS_RS13635 (VS_2900) - 3054993..3055532 (+) 540 WP_009848881.1 SPOR domain-containing protein -
  VS_RS13640 (VS_2901) hslV 3055759..3056307 (+) 549 WP_004729692.1 ATP-dependent protease subunit HslV -
  VS_RS13645 (VS_2902) hslU 3056366..3057706 (+) 1341 WP_009848880.1 HslU--HslV peptidase ATPase subunit -
  VS_RS13650 (VS_2903) - 3057862..3058779 (+) 918 WP_009848879.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  VS_RS13655 (VS_2904) rraA 3058853..3059371 (+) 519 WP_009848878.1 ribonuclease E activity regulator RraA -
  VS_RS13660 (VS_2905) zapB 3059481..3059723 (-) 243 WP_009848877.1 cell division protein ZapB -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36523.05 Da        Isoelectric Point: 6.4911

>NTDB_id=32302 VS_RS13630 WP_009848882.1 3053866..3054870(+) (cytR) [Vibrio atlanticus]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPISATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDVLKGNDVQAGSRLLE
AKLVVRGSTAPPRI

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=32302 VS_RS13630 WP_009848882.1 3053866..3054870(+) (cytR) [Vibrio atlanticus]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTTTCAACAGCCACGGTATCACGTGCATTGATGAACCCTGAAAA
AGTCTCGGTTTCTACTCGTAAGCGAGTGGAGACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATTGTTCCTGATATCTGTGACCCGTATTTCGCAGAGATCATTCGTGGT
ATCGAAGATGCCGCAGTAGAAAATGACTACCTCGTTTTACTGGGTGATAGCGGCCAACAGAAGAAGCGTGAGTCTTCATT
TGTTAACTTAGTATTCACCAAACAAGCTGACGGCATGCTACTACTTGGCACCGACCACCCGTTTGATGTCAGTAAGCCTG
AACAAAAAAATTTACCGCCGATGGTGATGGCGTGTGAGTTTGCCCCTGAGCTTGAACTCCCTACCGTACACATCGATAAC
CTGACCTCAGCATTTGAAGCGGTGAACTACCTAGCTCAGTTAGGCCATAAACGTATCGCTCAAATCTCAGGGCCCATATC
GGCAACGCTGTGTAAATTCCGCCAACAAGGTTACCAACAAGCGCTACGTCGTGCAGGAGTATCAATGAATCCTGCCTACA
GCACTGTCGGTGACTTTACCTTTGAAGCGGGCGCTCAAGCTGTTCGTCAATTACTCGCTCTTCCTGAACAACCTACAGCG
ATCTTCTGTCATAACGATGCGATGGCCATCGGCGCGATTCAAGAAGCGAAAAAATTAGGCTTACGCGTTCCTCAAGACCT
ATCGATTGTCGGCTTTGATGACATCCAATTCGCTCAATACTGCGATCCACCGCTAACCACTATTTCTCAGCCTCGTTATG
AGATTGGACGCCAAGCAATGTTGATGATGCTCGACGTACTTAAAGGCAACGATGTGCAAGCGGGGTCGCGCCTGCTTGAA
GCCAAATTAGTCGTTCGAGGTAGTACAGCGCCGCCTCGAATCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.458

99.401

0.889
  cytR Vibrio parahaemolyticus RIMD 2210633

87.387

99.701

0.871

Multiple sequence alignment