Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   EBN15_RS13540 Genome accession   NZ_CP033326
Coordinates   3130087..3130488 (-) Length   133 a.a.
NCBI ID   WP_104562659.1    Uniprot ID   -
Organism   Xanthomonas cucurbitae strain ATCC 23378     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3125087..3135488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBN15_RS13525 (EBN15_13585) - 3127101..3129137 (-) 2037 WP_104603166.1 methyl-accepting chemotaxis protein -
  EBN15_RS13530 (EBN15_13590) - 3129177..3129707 (-) 531 WP_039413900.1 chemotaxis protein CheW -
  EBN15_RS13535 (EBN15_13595) - 3129707..3130069 (-) 363 WP_104603165.1 response regulator -
  EBN15_RS13540 (EBN15_13600) pilG 3130087..3130488 (-) 402 WP_104562659.1 twitching motility response regulator PilG Regulator
  EBN15_RS13545 (EBN15_13605) gshB 3130727..3131677 (+) 951 WP_104603164.1 glutathione synthase -
  EBN15_RS13550 (EBN15_13610) - 3131674..3132549 (+) 876 WP_104603163.1 energy transducer TonB -
  EBN15_RS13555 (EBN15_13615) - 3132628..3132873 (-) 246 Protein_2668 ADP-ribosylglycohydrolase family protein -
  EBN15_RS13560 (EBN15_13620) tsaB 3132870..3133589 (-) 720 WP_104603162.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14699.09 Da        Isoelectric Point: 6.9539

>NTDB_id=322974 EBN15_RS13540 WP_104562659.1 3130087..3130488(-) (pilG) [Xanthomonas cucurbitae strain ATCC 23378]
MTENMAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=322974 EBN15_RS13540 WP_104562659.1 3130087..3130488(-) (pilG) [Xanthomonas cucurbitae strain ATCC 23378]
ATGACTGAAAACATGGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTCATCGACGATTCGAAGACCATCCGCCG
CACCGCCGAAACGCTGCTGAAGCGGGAAGGTTGTGAGGTGGTGACAGCGACCGATGGTTTCGAGGCACTGGCCAAGATCG
CCGACCAGCAACCGCAGATCATTTTCGTGGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGTGCGTTGATCAAG
GGCAACCAGCTCTTTAAATCGACGCCGGTCATCATGCTGTCGTCCAAGGATGGCCTGTTCGACAAGGCGCGTGGCCGCAT
CGTCGGTTCCGAGCAGTATCTGACCAAGCCATTCACCCGTGAAGAACTACTGAGCGCGATCCGCACCTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684

Multiple sequence alignment