Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VS_RS12075 Genome accession   NC_011753
Coordinates   2751985..2752503 (-) Length   172 a.a.
NCBI ID   WP_012604752.1    Uniprot ID   -
Organism   Vibrio atlanticus     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2746985..2757503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS12050 (VS_2557) rimM 2746994..2747548 (-) 555 WP_009847609.1 ribosome maturation factor RimM -
  VS_RS12055 (VS_2558) rpsP 2747575..2747823 (-) 249 WP_004735508.1 30S ribosomal protein S16 -
  VS_RS12060 (VS_2559) ffh 2748036..2749430 (-) 1395 WP_004735506.1 signal recognition particle protein -
  VS_RS12065 (VS_2560) - 2749631..2750425 (+) 795 WP_012604751.1 inner membrane protein YpjD -
  VS_RS12070 (VS_2561) - 2750553..2751824 (+) 1272 WP_009847611.1 HlyC/CorC family transporter -
  VS_RS12075 (VS_2562) luxS 2751985..2752503 (-) 519 WP_012604752.1 S-ribosylhomocysteine lyase Regulator
  VS_RS12080 (VS_2563) - 2752528..2753178 (-) 651 WP_041472904.1 hypothetical protein -
  VS_RS12085 (VS_2564) gshA 2753189..2754757 (-) 1569 WP_009847614.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18928.68 Da        Isoelectric Point: 4.6963

>NTDB_id=32289 VS_RS12075 WP_012604752.1 2751985..2752503(-) (luxS) [Vibrio atlanticus]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRAHLNGSAVEIIDISP
MGCRTGFYMSLIGTPSEQQVAEAWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=32289 VS_RS12075 WP_012604752.1 2751985..2752503(-) (luxS) [Vibrio atlanticus]
ATGCCTTTATTAGATAGTTTTACTGTTGATCACACGCGCATGAACGCACCTGCAGTTCGTGTTGCTAAAACAATGCAAAC
CCCCAAAGGGGATACCATTACGGTATTTGACCTGCGTTTTACTGCGCCAAACAAAGATATCCTATCTGAGAGAGGTATTC
ATACTCTCGAGCACCTATACGCTGGGTTCATGCGTGCTCACCTCAATGGCTCTGCGGTTGAGATCATTGATATTTCGCCT
ATGGGTTGTCGTACCGGTTTCTATATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGAAGCTTGGTTAGCGGC
TATGCAAGACGTACTGAAAGTTGAGAACCAGAATAAGATCCCTGAGTTGAACGAATACCAGTGTGGTACTGCGGCAATGC
ATTCCTTAGATGAAGCTAAAGAGATTGCGAATGCAATCATCGCTGCAGGTATCTCTGTAAACAAAAATGATGAACTGGCA
TTGCCAGAGTCGATGCTTCAAGAGCTTAAAATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

90.058

99.419

0.895

Multiple sequence alignment