Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   Aba7835_RS17925 Genome accession   NZ_CP033243
Coordinates   3696883..3697209 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 7835     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3691883..3702209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba7835_RS17905 (Aba7835_18170) - 3691989..3692618 (-) 630 WP_000219973.1 FHA domain-containing protein -
  Aba7835_RS17910 (Aba7835_18175) gspD 3692659..3694929 (-) 2271 WP_001196432.1 type II secretion system secretin GspD -
  Aba7835_RS17915 (Aba7835_18180) - 3694971..3695807 (-) 837 WP_000870031.1 type II secretion system protein N -
  Aba7835_RS17920 (Aba7835_18185) gspN 3695807..3696550 (-) 744 WP_000730343.1 type II secretion system protein N -
  Aba7835_RS17925 (Aba7835_18190) hns 3696883..3697209 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  Aba7835_RS17930 (Aba7835_18195) - 3697404..3697844 (-) 441 WP_000661569.1 acyl-CoA thioesterase -
  Aba7835_RS17935 (Aba7835_18200) - 3697852..3699045 (-) 1194 WP_000681770.1 hypothetical protein -
  Aba7835_RS17940 (Aba7835_18205) - 3699055..3699894 (-) 840 WP_001230192.1 hypothetical protein -
  Aba7835_RS17945 (Aba7835_18210) - 3699903..3700670 (-) 768 WP_000897411.1 uroporphyrinogen-III synthase -
  Aba7835_RS17950 (Aba7835_18215) hemC 3700675..3701592 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=322834 Aba7835_RS17925 WP_000801427.1 3696883..3697209(-) (hns) [Acinetobacter baumannii strain 7835]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=322834 Aba7835_RS17925 WP_000801427.1 3696883..3697209(-) (hns) [Acinetobacter baumannii strain 7835]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment