Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   VS_RS08055 Genome accession   NC_011753
Coordinates   1850885..1852066 (+) Length   393 a.a.
NCBI ID   WP_012604149.1    Uniprot ID   -
Organism   Vibrio atlanticus     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1845885..1857066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS08035 (VS_1720) - 1846395..1847174 (+) 780 WP_012604146.1 RelA/SpoT domain-containing protein -
  VS_RS08040 (VS_1721) ihfA 1847472..1847768 (-) 297 WP_004734853.1 integration host factor subunit alpha -
  VS_RS08045 (VS_1722) - 1848237..1849130 (-) 894 WP_029225334.1 EamA family transporter -
  VS_RS08050 (VS_1723) - 1849234..1850616 (+) 1383 WP_012604148.1 PLP-dependent aminotransferase family protein -
  VS_RS08055 (VS_1724) cqsA 1850885..1852066 (+) 1182 WP_012604149.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VS_RS08060 (VS_1725) - 1852220..1854268 (-) 2049 WP_012604150.1 response regulator -
  VS_RS08065 (VS_1726) - 1854540..1855355 (-) 816 WP_012604151.1 TauD/TfdA dioxygenase family protein -
  VS_RS08070 (VS_1727) - 1855846..1856247 (+) 402 WP_012604152.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43832.92 Da        Isoelectric Point: 6.2959

>NTDB_id=32277 VS_RS08055 WP_012604149.1 1850885..1852066(+) (cqsA) [Vibrio atlanticus]
MSDTTKNKPLPSFIEERLNFYIQDLITQNQSQKHLVLGKRPQRNAVVMQSNDYLALSHNKPIQDAHQAAIIEHDDNVVMS
AIFLQDEESKPAFETELANYVGMESCLLSQSGWAANIGLLQTICPPDTSVYIDFFAHMSLWEGIRAAGGIAHPFMHNNMN
HLRKQLERHGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCAVVVDESHSLGTHGENGAGIVHALGLTKQVDFITVSLAK
TFAYRAGAILGPKLLSETLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKSADDKRQALFQRAKSLTTGLKRIGFNIRSESQ
IVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYHHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=32277 VS_RS08055 WP_012604149.1 1850885..1852066(+) (cqsA) [Vibrio atlanticus]
ATGAGTGATACAACAAAAAACAAACCACTACCTTCCTTTATCGAAGAACGCTTGAATTTCTATATTCAAGACCTCATTAC
CCAGAACCAAAGCCAAAAGCACTTGGTATTGGGTAAACGACCTCAGCGCAATGCCGTCGTGATGCAGAGCAATGATTACT
TAGCACTGTCACACAACAAACCGATCCAAGACGCCCATCAAGCAGCGATTATTGAACACGATGACAACGTAGTGATGTCT
GCAATTTTTTTACAAGATGAAGAGTCTAAACCTGCGTTTGAAACCGAGCTCGCGAACTATGTCGGAATGGAGAGCTGTTT
GCTTTCTCAGTCAGGTTGGGCGGCCAATATTGGACTATTACAAACCATCTGCCCGCCGGACACATCGGTGTATATCGACT
TTTTTGCCCATATGTCGCTATGGGAAGGCATTCGTGCCGCTGGCGGCATCGCCCACCCGTTTATGCATAACAATATGAAT
CACCTGCGTAAACAGTTAGAGCGCCACGGCTCAGGCGTTATTGTGGTCGATTCGGTTTACAGTACCATTGGGACCATCGC
CCCACTACGCGACATCTACGAAATGGCGCAGGAGTTTGATTGTGCCGTCGTCGTTGATGAATCGCATTCATTGGGCACGC
ATGGGGAAAATGGTGCCGGCATAGTTCACGCATTGGGCCTTACAAAGCAAGTCGACTTCATCACCGTAAGTTTGGCTAAA
ACCTTTGCTTATCGTGCAGGCGCGATCCTTGGACCAAAACTACTTTCAGAAACCTTACCGTTTGTTGCTTATCCCGCGAT
TTTCAGCTCGACCGTGTTACCACAAGAGGTGGTCCGTTTAGAGAAAACATTAGAGGTAATCAAAAGTGCAGATGATAAAC
GACAGGCTCTGTTCCAGCGTGCTAAATCGTTGACTACGGGTCTAAAACGAATTGGCTTTAATATCCGCAGCGAGTCTCAA
ATTGTGGCATTAGAATGTGGTAGTGAAAGAAACACTGAACGTGTTCGCGATTTCCTCGAAGAACGGAATGTGTTCGGTGC
GGTGTTCTGCCGCCCCGCTACGGGCAAGAACAAGAACATCATCCGATTTTCAGTGAATGCCGATATGACACCACGAGACA
TTGACCATGTGCTCACCGTTTGTCACGAAGCGTACCATCACCCAGAGTTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.072

98.473

0.552

Multiple sequence alignment