Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SMI_RS02850 Genome accession   NC_013853
Coordinates   502474..503745 (-) Length   423 a.a.
NCBI ID   WP_001113195.1    Uniprot ID   -
Organism   Streptococcus mitis B6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 497474..508745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS02820 (smi_0554) - 497862..498098 (-) 237 WP_000964738.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  SMI_RS02825 (smi_0555) mgaSpn 498384..499862 (+) 1479 WP_001205267.1 virulence factor transcriptional regulator MgaSpn -
  SMI_RS02830 (smi_0556) - 500108..500335 (-) 228 Protein_515 glyoxalase -
  SMI_RS02835 (smi_0557) - 500378..501382 (-) 1005 WP_000861516.1 NADP-dependent oxidoreductase -
  SMI_RS02840 (smi_0558) - 501473..501904 (-) 432 WP_000379854.1 Rrf2 family transcriptional regulator -
  SMI_RS02850 (smi_0560) rarA 502474..503745 (-) 1272 WP_001113195.1 replication-associated recombination protein A Machinery gene
  SMI_RS02855 (smi_0561) - 503861..504331 (+) 471 WP_000257130.1 DUF3013 family protein -
  SMI_RS02860 (smi_0562) - 504338..504784 (+) 447 WP_000636798.1 NUDIX hydrolase -
  SMI_RS02865 (smi_0563) prmA 504922..505872 (+) 951 WP_000451174.1 50S ribosomal protein L11 methyltransferase -
  SMI_RS02870 (smi_0564) - 505874..506617 (+) 744 WP_001188179.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SMI_RS02875 (smi_0565) pepF 506628..508424 (+) 1797 WP_000435576.1 oligoendopeptidase F -
  SMI_RS02880 - 508458..508604 (+) 147 WP_164925496.1 hypothetical protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46964.41 Da        Isoelectric Point: 5.9140

>NTDB_id=32277 SMI_RS02850 WP_001113195.1 502474..503745(-) (rarA) [Streptococcus mitis B6]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPVELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDESIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDQALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHKYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDHLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=32277 SMI_RS02850 WP_001113195.1 502474..503745(-) (rarA) [Streptococcus mitis B6]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAACATCTGGTCGGGCCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAATCGCCTCTCCTCCATGATTCTCTATGGACCTCCAGGAATCGGCAAGACCA
GTATTGCCTCTGCCATCGCTGGAACAACAAAGTATGCCTTTCGAACTTTCAATGCGACAGTAGATAGTAAAAAAAGACTC
CAAGAAATTGCGGAAGAGGCTAAATTTTCAGGTGGCCTCGTCCTATTACTAGACGAAATCCATCGTCTAGACAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGCGCTACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGCAGTCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAGCGTGGTTTTGATTTTCCAGTAGAACTAGATGAGGATGCGCTGGATTTCATTGCGACCTC
TACAAATGGAGACCTGCGTTCTGCCTTCAACTCACTGGATTTGGCAGTTCTCTCTACCCCTGAGAATGACGAGAGCATCC
GCCACATCACCCTCGACATCATGGAAAATAGCCTGCAGCGGAGCTACATTACCATGGACAAGGATGGAGACGGTCACTAT
GACGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTTGATGCCAGTCTTCACTATGCTGCCCGCTTGATTGA
GGCTGGTGATTTGCCAAGTCTCGCTCGTCGCTTGACTGTTATCGCATATGAGGATATCGGCTTGGCCAATCCTGAAGCCC
AAATTCATACCGTGACTGCTCTGGATGCCGCCCAAAAGATTGGTTTTCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGACCAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAAGTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATCCGCAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAGCGGGCTTTGGCTCAAAGAAAGGAAGCCATCGACCATTTACGAAAAATCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

58.191

96.69

0.563

Multiple sequence alignment