Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D9Y32_RS20800 Genome accession   NZ_CP033218
Coordinates   3987623..3989353 (-) Length   576 a.a.
NCBI ID   WP_142782734.1    Uniprot ID   -
Organism   Bacillus licheniformis strain TCCC 11148     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3982623..3994353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS23800 - 3983080..3983280 (-) 201 WP_260677302.1 hypothetical protein -
  D9Y32_RS23805 - 3983277..3983399 (-) 123 WP_260677303.1 hypothetical protein -
  D9Y32_RS23810 - 3983398..3983730 (+) 333 WP_223307051.1 hypothetical protein -
  D9Y32_RS20780 (D9Y32_20805) - 3983864..3984268 (-) 405 WP_142782733.1 serine O-acetyltransferase -
  D9Y32_RS20785 (D9Y32_20810) - 3984398..3984694 (-) 297 WP_003183359.1 antimicrobial peptide LCI -
  D9Y32_RS20790 (D9Y32_20815) spo0A 3985067..3985867 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  D9Y32_RS20795 (D9Y32_20820) spoIVB 3986157..3987473 (-) 1317 WP_044051837.1 SpoIVB peptidase -
  D9Y32_RS20800 (D9Y32_20825) recN 3987623..3989353 (-) 1731 WP_142782734.1 DNA repair protein RecN Machinery gene
  D9Y32_RS20805 (D9Y32_20830) ahrC 3989385..3989834 (-) 450 WP_003183369.1 transcriptional regulator AhrC/ArgR -
  D9Y32_RS20810 (D9Y32_20835) - 3990000..3990845 (-) 846 WP_003183371.1 TlyA family RNA methyltransferase -
  D9Y32_RS20815 (D9Y32_20840) dxs 3990842..3992743 (-) 1902 WP_003183372.1 1-deoxy-D-xylulose-5-phosphate synthase -
  D9Y32_RS20820 (D9Y32_20845) - 3992977..3993867 (-) 891 WP_003183374.1 polyprenyl synthetase family protein -
  D9Y32_RS20825 (D9Y32_20850) - 3993857..3994117 (-) 261 WP_011198110.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64514.28 Da        Isoelectric Point: 4.7726

>NTDB_id=322753 D9Y32_RS20800 WP_142782734.1 3987623..3989353(-) (recN) [Bacillus licheniformis strain TCCC 11148]
MLAELSIKNFAIIEELTVSFEKGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEYVRYGEKRAELEGLFLLDGGHPVFDLC
TELGIEASDDMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDEHHLQLLDRFAGEEIENALK
AYQEVYSRYMDVMKKVKELSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLQEERRQIANFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINEGLNKVSESVANAYYILEDSTFQIRNMLDELEYDPERLDYIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIENRDSHLQALKSRLESIGKDVAIEAANVSEIRKKWAEKLAKQIQQELKDLYMEKSTFDTEFHV
KKAERDDDAPVVNGMSVQLTKHGIDTVRFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLSKQEKIAEIGRMIAGVEVTDLTKR
HAKELLNQAKLVKTSG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=322753 D9Y32_RS20800 WP_142782734.1 3987623..3989353(-) (recN) [Bacillus licheniformis strain TCCC 11148]
TTGTTAGCTGAATTATCGATCAAAAACTTTGCGATTATCGAAGAATTAACCGTTTCTTTTGAAAAAGGGCTGACGGTTCT
AACCGGTGAAACAGGTGCCGGAAAATCGATCATCATCGACGCCGTCTCTTTGCTTGTCGGAGGCCGCGGATCGTCCGAAT
ATGTCAGGTATGGCGAAAAAAGGGCCGAATTGGAAGGGCTTTTCCTCCTTGACGGCGGCCATCCGGTTTTTGATTTGTGC
ACAGAGCTGGGGATTGAAGCCTCGGACGACATGATCGTCATGAGAAGAGATATTAACGCAAACGGCAAAAGCATCTGCCG
CGTCAATGGAAAACTTGTCACCATTGCCGCATTGCGGGAAGTCGGCAGACTGCTGCTTGACATTCACGGGCAGCACGACA
ATCAGCTGCTGATGGAGGACGAGCACCATCTTCAGCTTCTGGACAGGTTCGCAGGAGAAGAAATCGAGAATGCTTTAAAA
GCGTATCAGGAAGTTTACAGCCGCTACATGGATGTCATGAAGAAGGTGAAAGAGCTTTCTGAAAGCGAGCAGGAAATGGC
TCACAGGCTCGATTTAATACAGTTCCAGCTTGACGAAATCGAATCAGCAAACCTTGAGCCGAAAGAGGACGAGCTTCTTC
AGGAAGAGCGCCGTCAAATTGCAAATTTCGAAAAAATATACGAAGCGCTGCAAAATGCCTATAATGCGCTTCGCAATGAG
CAGGCCGGGCTTGACTGGGTCGGCATGGCTTCAAGCGAGCTTGAAAACGTCTCAGGCATTAATGAAGGACTCAATAAAGT
ATCTGAATCGGTAGCCAACGCTTACTACATTCTCGAAGATTCAACCTTTCAGATCAGAAATATGCTGGATGAACTCGAAT
ACGACCCCGAGCGCCTCGATTATATCGAATCGCGTTTAAACGAAATCAAACAGCTGAAACGCAAATACGGCGCTACTGTC
GAAGACATCCAAGCTTATTCGGCTAAGATAGAGGAAGAAATCGACCGGATCGAAAACCGGGACAGCCACTTGCAGGCTTT
AAAATCACGACTCGAATCAATCGGCAAGGATGTGGCGATTGAAGCAGCCAATGTGTCCGAAATCAGAAAAAAATGGGCGG
AAAAGCTGGCCAAACAGATTCAGCAGGAATTGAAAGATCTGTATATGGAAAAATCGACATTTGATACGGAATTTCATGTG
AAAAAAGCGGAACGGGATGATGATGCACCCGTCGTCAACGGAATGTCTGTTCAGCTCACAAAGCACGGCATTGACACCGT
TCGTTTCCTGATCTCCACAAACACGGGAGAACCGCTTAAATCCTTGTCAAAGGTTGCTTCAGGAGGAGAGCTCTCAAGAA
TCATGCTGGCGATGAAAAGCATTTTCTCCGCTCAGCAGGATGTTACATCGATCATTTTCGATGAAGTGGACACTGGTGTA
AGCGGAAGAGTCGCGCAGGCGATCGCTGAAAAAATACACCGAGTCTCTATCGGCTCTCAAGTTTTATGCATTACCCACTT
GCCGCAGGTGGCCGCGATGGCTGACACCCACCTTTTGATCACGAAACAGTCGAAAGACGGGAGAACAACAACAAGCGTCA
CACCTTTGTCAAAACAGGAAAAAATAGCGGAAATCGGCCGGATGATTGCCGGCGTTGAAGTAACGGATTTGACGAAGCGC
CATGCGAAAGAACTTTTAAATCAAGCTAAGCTAGTCAAAACCAGCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

81.076

100

0.811

Multiple sequence alignment