Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D9Y32_RS16285 Genome accession   NZ_CP033218
Coordinates   3157497..3158399 (-) Length   300 a.a.
NCBI ID   WP_142782554.1    Uniprot ID   -
Organism   Bacillus licheniformis strain TCCC 11148     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3152497..3163399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS16270 (D9Y32_16300) xerC 3152856..3153770 (-) 915 WP_003181750.1 tyrosine recombinase XerC -
  D9Y32_RS16275 (D9Y32_16305) trmFO 3153837..3155141 (-) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  D9Y32_RS16280 (D9Y32_16310) topA 3155217..3157292 (-) 2076 WP_142782553.1 type I DNA topoisomerase -
  D9Y32_RS16285 (D9Y32_16315) dprA 3157497..3158399 (-) 903 WP_142782554.1 DNA-processing protein DprA Machinery gene
  D9Y32_RS16290 (D9Y32_16320) sucD 3158513..3159415 (-) 903 WP_009328521.1 succinate--CoA ligase subunit alpha -
  D9Y32_RS16295 (D9Y32_16325) sucC 3159434..3160594 (-) 1161 WP_003181739.1 ADP-forming succinate--CoA ligase subunit beta -
  D9Y32_RS16300 (D9Y32_16330) - 3160771..3161052 (-) 282 WP_003181737.1 FlhB-like flagellar biosynthesis protein -
  D9Y32_RS16305 (D9Y32_16335) - 3161049..3162737 (-) 1689 WP_017474806.1 hypothetical protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33181.50 Da        Isoelectric Point: 10.1822

>NTDB_id=322740 D9Y32_RS16285 WP_142782554.1 3157497..3158399(-) (dprA) [Bacillus licheniformis strain TCCC 11148]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKLSLKRSDLCSIRKLAEQELSNVKRLIRSYEAAGVRM
TAISSPDYPASLKTIHDPPPVLFLKGNKKLLHEQRLIGIVGTRCPSLYGKRAAVQLVRELCKNSWTIVSGLAKGIDGLAH
QESIRSKGRTIGVIAGGFNSIYPREHRQLAGQMAESHLLVSEHPPHIKPQIWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSFGPSRLIQEGAKLVLTIEDILNELPPSNAQYTEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=322740 D9Y32_RS16285 WP_142782554.1 3157497..3158399(-) (dprA) [Bacillus licheniformis strain TCCC 11148]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGACCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGGAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAGGCGGCCGGCGTCCGCATG
ACCGCCATATCTTCCCCTGATTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAAA
CAAAAAACTTCTCCATGAACAAAGACTGATCGGAATCGTCGGAACTCGCTGCCCGTCATTATACGGAAAAAGAGCTGCGG
TCCAGCTTGTCAGGGAGCTTTGCAAAAACAGCTGGACGATCGTCAGCGGTCTTGCAAAAGGAATTGACGGTCTCGCCCAT
CAGGAGAGCATCCGTTCAAAGGGAAGGACAATCGGCGTTATCGCGGGCGGATTCAACAGCATATATCCCCGTGAACATCG
CCAGCTCGCCGGACAAATGGCCGAAAGCCACCTGCTGGTATCAGAGCACCCTCCTCACATTAAACCGCAAATATGGCATT
TTCCCATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAAGGCAAGGAAAAGAGCGGATCGCTC
ATTACAGCATACCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCGGGTCCGATCTTTGATGCCAACTCTTTCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTAACTATTGAAGACATTTTGAACGAACTTCCGCCTTCAAACG
CTCAATATACAGAGCCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.191

99.667

0.57
  dprA Legionella pneumophila strain ERS1305867

39.404

100

0.397

Multiple sequence alignment