Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   D9Y32_RS11450 Genome accession   NZ_CP033218
Coordinates   2243586..2244224 (+) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus licheniformis strain TCCC 11148     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2238586..2249224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS11420 (D9Y32_11430) - 2238977..2239324 (-) 348 WP_009329512.1 hypothetical protein -
  D9Y32_RS11430 (D9Y32_11440) degQ 2239810..2239950 (+) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  D9Y32_RS11435 (D9Y32_11445) - 2240139..2241020 (+) 882 WP_009329511.1 polyprenyl synthetase family protein -
  D9Y32_RS11440 (D9Y32_11450) comX 2241024..2241197 (+) 174 WP_142782424.1 competence pheromone ComX -
  D9Y32_RS11445 (D9Y32_11455) comP 2241199..2243499 (+) 2301 WP_009329509.1 ATP-binding protein Regulator
  D9Y32_RS11450 (D9Y32_11460) comA 2243586..2244224 (+) 639 WP_003184849.1 response regulator transcription factor Regulator
  D9Y32_RS11455 (D9Y32_11465) - 2244241..2244630 (+) 390 WP_009329508.1 hotdog fold thioesterase -
  D9Y32_RS11460 (D9Y32_11470) mnhG 2244670..2245044 (-) 375 WP_003184844.1 monovalent cation/H(+) antiporter subunit G -
  D9Y32_RS11465 (D9Y32_11475) - 2245028..2245312 (-) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  D9Y32_RS11470 (D9Y32_11480) - 2245312..2245788 (-) 477 WP_003184840.1 Na+/H+ antiporter subunit E -
  D9Y32_RS11475 (D9Y32_11485) - 2245794..2247272 (-) 1479 WP_003184838.1 Na+/H+ antiporter subunit D -
  D9Y32_RS11480 (D9Y32_11490) - 2247265..2247606 (-) 342 WP_003184836.1 Na(+)/H(+) antiporter subunit C -
  D9Y32_RS11485 (D9Y32_11495) - 2247606..2248037 (-) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=322724 D9Y32_RS11450 WP_003184849.1 2243586..2244224(+) (comA) [Bacillus licheniformis strain TCCC 11148]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=322724 D9Y32_RS11450 WP_003184849.1 2243586..2244224(+) (comA) [Bacillus licheniformis strain TCCC 11148]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAACATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACATGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTTCTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGT
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGACCTCTTGACTGAAAGGGAATGCCTGATTTTA
AAAGAAGTCGAAAAAGGCTACACAAATCAGGAAATTGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGCTT
GACTTCCGTATTCAGCAAGCTGAATGTAGGATCAAGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGTGTACTCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778

Multiple sequence alignment