Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FE383_RS13215 Genome accession   NZ_CP040663
Coordinates   2699909..2700646 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EK2009     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2694909..2705646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE383_RS13200 (FE383_13200) clpC 2695363..2697936 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  FE383_RS13205 (FE383_13205) yfiH 2698066..2698797 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  FE383_RS13210 (FE383_13210) rluD 2698794..2699774 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FE383_RS13215 (FE383_13215) comL 2699909..2700646 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FE383_RS13220 (FE383_13220) raiA 2700917..2701258 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FE383_RS13225 (FE383_13225) pheL 2701362..2701409 (+) 48 WP_010723158.1 phe operon leader peptide -
  FE383_RS13230 (FE383_13230) pheA 2701508..2702668 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  FE383_RS13235 (FE383_13235) tyrA 2702711..2703832 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FE383_RS13240 (FE383_13240) aroF 2703843..2704913 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FE383_RS13245 (FE383_13245) yfiL 2705123..2705488 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=322707 FE383_RS13215 WP_000197686.1 2699909..2700646(+) (comL) [Escherichia coli strain EK2009]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=322707 FE383_RS13215 WP_000197686.1 2699909..2700646(+) (comL) [Escherichia coli strain EK2009]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment