Detailed information NTG0322707

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: D9Y32_RS06630
• Genome accession: NZ_CP033218
• Coordinates: 1275635..1276747 (-)
• Length: 370 a.a.
• NCBI ID: WP_003178089.1
• Uniprot ID: A0A415J9T0
• Organism: Bacillus licheniformis strain TCCC 11148
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1270635..1281747

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9Y32_RS06615 (D9Y32_06615)	gyrA	1270743..1273211 (-)	2469	WP_003178095.1	DNA gyrase subunit A	-
D9Y32_RS06620 (D9Y32_06620)	gyrB	1273402..1275315 (-)	1914	WP_009330043.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
D9Y32_RS06625 (D9Y32_06625)	remB	1275375..1275617 (-)	243	WP_003178090.1	extracellular matrix regulator RemB	-
D9Y32_RS06630 (D9Y32_06630)	recF	1275635..1276747 (-)	1113	WP_003178089.1	DNA replication/repair protein RecF	Machinery gene
D9Y32_RS06635 (D9Y32_06635)	yaaA	1276764..1276979 (-)	216	WP_003178084.1	S4 domain-containing protein YaaA	-
D9Y32_RS06640 (D9Y32_06640)	dnaN	1277147..1278283 (-)	1137	WP_003178080.1	DNA polymerase III subunit beta	-
D9Y32_RS06645 (D9Y32_06645)	dnaA	1278460..1279800 (-)	1341	WP_003178077.1	chromosomal replication initiator protein DnaA	-
D9Y32_RS06650 (D9Y32_06650)	rpmH	1280440..1280574 (+)	135	WP_003178075.1	50S ribosomal protein L34	-
D9Y32_RS06655 (D9Y32_06655)	rnpA	1280659..1281018 (+)	360	WP_003178055.1	ribonuclease P protein component	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42482.33 Da
• Isoelectric Point: 6.7331

>NTDB_id=322707 D9Y32_RS06630 WP_003178089.1 1275635..1276747(-) (recF) [Bacillus licheniformis strain TCCC 11148]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide

• Length: 1113 bp

>NTDB_id=322707 D9Y32_RS06630 WP_003178089.1 1275635..1276747(-) (recF) [Bacillus licheniformis strain TCCC 11148]
TTGTATATCCAAAATCTTACATTATCGTCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAACGCTCAAGGAAAAACAAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTTGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTGAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTCGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGACATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCTTGAAGCAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTTTCAGGTCCCCACAG
GGATGATGTTCTTTTCTATGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGCACGACTGCATTGT
CGCTTAAATTGGCTGAAATCGACTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGCGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGTGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-346)

3D structure

• AlphaFold DB: A0A415J9T0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	89.13	99.459	0.886