Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   D9Y32_RS03935 Genome accession   NZ_CP033218
Coordinates   771508..772461 (-) Length   317 a.a.
NCBI ID   WP_061578574.1    Uniprot ID   -
Organism   Bacillus licheniformis strain TCCC 11148     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 766508..777461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS03915 (D9Y32_03915) - 767264..768685 (+) 1422 WP_003178944.1 MDR family MFS transporter -
  D9Y32_RS03920 (D9Y32_03920) - 768854..769801 (-) 948 WP_003178942.1 siderophore ABC transporter substrate-binding protein -
  D9Y32_RS03925 (D9Y32_03925) - 769816..770574 (-) 759 WP_003178940.1 ABC transporter ATP-binding protein -
  D9Y32_RS03930 (D9Y32_03930) - 770574..771518 (-) 945 WP_142782140.1 iron chelate uptake ABC transporter family permease subunit -
  D9Y32_RS03935 (D9Y32_03935) ceuB 771508..772461 (-) 954 WP_061578574.1 ABC transporter permease Machinery gene
  D9Y32_RS03940 (D9Y32_03940) - 772735..774096 (+) 1362 WP_009330182.1 aspartate kinase -
  D9Y32_RS24010 (D9Y32_03945) - 774232..775937 (+) 1706 Protein_755 methyl-accepting chemotaxis protein -
  D9Y32_RS03950 (D9Y32_03950) - 775970..777397 (-) 1428 WP_142782141.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35279.70 Da        Isoelectric Point: 10.1282

>NTDB_id=322699 D9Y32_RS03935 WP_061578574.1 771508..772461(-) (ceuB) [Bacillus licheniformis strain TCCC 11148]
MKLRYLLLMLIILSFSSIFIGVKELSPLDLFRFNEDEIQTLYISRIPRLISIVLAGMSLSICGLIMQQLTRNKFVSPTTA
GTMDWARLGVIIAIVLFSSAGIVVKILFAFVFALFGSFLFVKILDRIKFKDAIFIPLVGMMLGSVVSAIYTFMAYQYNII
QNVNAWFEGNFSLVMKGRYEFLFLSIPLVIIAYLFANKFTLAGMGESFSINLGLKYKRVVNIGLIIVSIISSVVILTIGT
LPFLGLIIPNIVSIYRGDHLKNSLPHTAVLGAVFVLFCDIAGRLVIYPYEISVGLMVGIIGSGVFLYLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=322699 D9Y32_RS03935 WP_061578574.1 771508..772461(-) (ceuB) [Bacillus licheniformis strain TCCC 11148]
ATGAAATTACGATACCTATTGCTAATGCTCATCATTCTTTCATTCAGCTCGATATTCATCGGCGTTAAGGAGCTTTCGCC
TCTTGACCTTTTCCGCTTTAATGAGGACGAAATTCAAACGCTTTACATAAGCAGAATCCCGCGCTTGATCAGCATCGTGC
TTGCGGGAATGAGCTTGAGCATCTGCGGGCTGATTATGCAGCAGCTGACGCGCAATAAATTTGTTTCACCAACCACCGCT
GGAACGATGGATTGGGCTCGGCTCGGCGTGATCATTGCGATCGTGCTTTTTTCGTCTGCAGGGATAGTAGTCAAAATACT
GTTTGCCTTTGTTTTTGCACTGTTTGGCAGCTTTTTGTTCGTCAAAATTTTGGACAGAATCAAGTTCAAAGATGCGATTT
TCATCCCTCTCGTCGGAATGATGCTCGGGAGCGTTGTGAGCGCCATCTATACTTTCATGGCTTATCAGTACAATATTATT
CAAAACGTCAATGCATGGTTTGAAGGGAATTTTTCGCTGGTCATGAAGGGGAGGTATGAGTTCTTATTTCTGAGTATACC
GCTCGTTATCATTGCCTATCTGTTCGCCAATAAATTCACGTTGGCCGGGATGGGGGAGTCATTTTCCATCAATCTTGGTT
TGAAATACAAGCGGGTGGTCAATATCGGGCTGATCATCGTATCTATTATTTCGTCCGTCGTCATCCTGACGATCGGCACG
CTTCCCTTTTTGGGATTGATCATCCCGAACATCGTGTCCATTTACAGGGGAGATCATTTGAAAAACAGCCTGCCTCACAC
GGCAGTTCTCGGAGCCGTTTTCGTCTTGTTTTGCGATATAGCGGGACGTCTCGTCATTTACCCGTACGAAATTTCGGTTG
GTTTGATGGTCGGCATCATCGGGAGCGGCGTTTTTCTTTACTTGCTTTTAAGGAGAAAAGCCTATGCGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.949

99.685

0.508

Multiple sequence alignment