Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   D9Y32_RS00590 Genome accession   NZ_CP033218
Coordinates   122147..122725 (-) Length   192 a.a.
NCBI ID   WP_061576175.1    Uniprot ID   -
Organism   Bacillus licheniformis strain TCCC 11148     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 117147..127725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS00570 (D9Y32_00570) - 118507..120282 (+) 1776 WP_003180361.1 S8 family peptidase -
  D9Y32_RS00575 (D9Y32_00575) lepB 120437..120955 (-) 519 WP_003180360.1 signal peptidase I -
  D9Y32_RS00580 (D9Y32_00580) - 120968..121579 (-) 612 WP_003180359.1 TVP38/TMEM64 family protein -
  D9Y32_RS00585 (D9Y32_00585) - 121788..122153 (+) 366 WP_003180357.1 hypothetical protein -
  D9Y32_RS00590 (D9Y32_00590) comK 122147..122725 (-) 579 WP_061576175.1 competence protein ComK Regulator
  D9Y32_RS00595 (D9Y32_00595) - 122998..123231 (+) 234 WP_003180353.1 IDEAL domain-containing protein -
  D9Y32_RS00600 (D9Y32_00600) - 123297..124154 (-) 858 WP_003180352.1 SDR family oxidoreductase -
  D9Y32_RS00605 (D9Y32_00605) - 124274..125824 (+) 1551 WP_044051823.1 FAD-dependent oxidoreductase -
  D9Y32_RS23970 - 125931..126464 (+) 534 Protein_125 protoglobin family protein -
  D9Y32_RS23975 - 126729..127223 (+) 495 WP_369878922.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22404.59 Da        Isoelectric Point: 8.2478

>NTDB_id=322692 D9Y32_RS00590 WP_061576175.1 122147..122725(-) (comK) [Bacillus licheniformis strain TCCC 11148]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFRVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSISSFENQVYRTAWLRTKFIDRIEGN
PMQKKQEFMLYPKEDQNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=322692 D9Y32_RS00590 WP_061576175.1 122147..122725(-) (comK) [Bacillus licheniformis strain TCCC 11148]
ATGAGCACAGAGGATATGACAAAGGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTTGAGACCGACAGGACTTTCCGCGTCAATATGAAGCCGTTTCAAATTATCGAAAGAAGCT
GCCGCTATTTCGGATCGAGCTATGCGGGAAGAAAAGCGGGCACATATGAAGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAACATTTTTCTTTTCCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCTCATCTTTCGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACAGGATTGAAGGAAAC
CCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAAGAAGACCAGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.085

97.917

0.667

Multiple sequence alignment