Detailed information NTG0322631

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FGC38_RS14875
• Genome accession: NZ_CP040643
• Coordinates: 2998112..2999104 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain BE104
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2993112..3004104

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGC38_RS14855 (FGC38_14855)	otnK	2993888..2995054 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
FGC38_RS14860 (FGC38_14860)	ygbL	2995146..2995784 (+)	639	WP_001278994.1	aldolase	-
FGC38_RS14865 (FGC38_14865)	ygbM	2995789..2996565 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
FGC38_RS14870 (FGC38_14870)	ygbN	2996654..2998018 (+)	1365	WP_000104441.1	GntP family transporter	-
FGC38_RS14875 (FGC38_14875)	rpoS	2998112..2999104 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
FGC38_RS14880 (FGC38_14880)	nlpD	2999167..3000261 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FGC38_RS14885 (FGC38_14885)	pcm	3000446..3001072 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FGC38_RS14890 (FGC38_14890)	surE	3001066..3001827 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FGC38_RS14895 (FGC38_14895)	truD	3001808..3002857 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FGC38_RS14900 (FGC38_14900)	ispF	3002854..3003333 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FGC38_RS14905 (FGC38_14905)	ispD	3003333..3004043 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=322631 FGC38_RS14875 WP_000081588.1 2998112..2999104(-) (rpoS) [Escherichia coli strain BE104]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=322631 FGC38_RS14875 WP_000081588.1 2998112..2999104(-) (rpoS) [Escherichia coli strain BE104]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715